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Report for CCDS2720.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2720.2 Public Homo sapiens 3 ZNF501 24 110 108 CCDS HistoryNCBI Gene:115560Re-query CCDS DB by CCDS ID:2720.2Re-query CCDS DB by GeneID:115560See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 2720.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396048.6 ENSP00000379363.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396048.6Link to Ensembl Protein Viewer:ENSP00000379363.2Re-query CCDS DB by Nucleotide ID:ENST00000396048Re-query CCDS DB by Protein ID:ENSP00000379363
Original member Current member EBI ENST00000620116.5 ENSP00000482632.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000620116.5Link to Ensembl Protein Viewer:ENSP00000482632.1Re-query CCDS DB by Nucleotide ID:ENST00000620116Re-query CCDS DB by Protein ID:ENSP00000482632
Original member Current member NCBI NM_001258280.2 NP_001245209.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001258280.2Link to Protein Sequence:NP_001245209.1Re-query CCDS DB by Nucleotide ID:NM_001258280Re-query CCDS DB by Protein ID:NP_001245209Link to BLAST:NP_001245209.1
Original member Current member NCBI NM_145044.4 NP_659481.2 Accepted alive Link to Nucleotide Sequence:NM_145044.4Link to Protein Sequence:NP_659481.2Re-query CCDS DB by Nucleotide ID:NM_145044Re-query CCDS DB by Protein ID:NP_659481Link to BLAST:NP_659481.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245209.1 271 Q96CX3-1 271 100% 0 0
NP_659481.2 271 Q96CX3-1 271 100% 0 0

Chromosomal Locations for CCDS 2720.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 44734422 44735237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGAATTCCAGCCAAATATCACTCAGAATGAAACATGGGAGAGTTAACATGCAGAAGAAACCTTCAAAGT
GTAGTGAATGTGGGAAGTTCTTTACTCAGAGATCATCTCTTACCCAGCACCAGAGGATTCACAGAGGAGA
GAAGCCCTATGTGTGCAGTGAATGTGGAAGTTGTTTCCGTAAACAGTCAAATCTTACTCAACATCTGAGA
ATTCATACCGGAGAGAAACCTTATAAATGTAATGAATGTGAGAAAGCCTTTCAAACAAAAGCAATTCTTG
TTCAGCATCTGAGAATTCATACTGGAGAGAAACCCTATAAATGCAATGAATGTGGAAAAGCCTTTTGTCA
GAGCCCATCCCTTATTAAACACCAGCGAATTCATACTGGAGAGAAACCATATAAATGTACAGAATGTGGC
AAAGCCTTCAGTCAGAGCATATGCCTTACTCGTCATCAGAGAAGTCATTCTGGAGATAAACCTTTTAAGT
GTAATGAATGTGGGAAAGCCTTTAATCAGAGTGCATGTCTCATGCAGCATCAGAGAATTCATTCAGGAGA
GAAGCCCTACACATGCACTGAATGTGGTAAAGCCTTCACTCAGAACTCTTCCCTTGTTGAACATGAAAGG
ACTCACACTGGAGAGAAACTTTATAAGTGTAGTGAGTGTGAAAAAACTTTCCGCAAACAAGCACACCTTA
GTGAGCATTACAGAATTCATACTGGAGAAAAACCTTATGAGTGTGTTGGATGTGGGAAATCCTTTAGGCA
CAGTTCAGCACTTCTTCGACATCAGAGGCTTCATGCTGGAGAGTAA

Translation (271 aa):
MNSSQISLRMKHGRVNMQKKPSKCSECGKFFTQRSSLTQHQRIHRGEKPYVCSECGSCFRKQSNLTQHLR
IHTGEKPYKCNECEKAFQTKAILVQHLRIHTGEKPYKCNECGKAFCQSPSLIKHQRIHTGEKPYKCTECG
KAFSQSICLTRHQRSHSGDKPFKCNECGKAFNQSACLMQHQRIHSGEKPYTCTECGKAFTQNSSLVEHER
THTGEKLYKCSECEKTFRKQAHLSEHYRIHTGEKPYECVGCGKSFRHSSALLRHQRLHAGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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