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Report for CCDS4933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4933.1 Public Homo sapiens 6 TFAP2D 24 110 108 CCDS HistoryNCBI Gene:83741Re-query CCDS DB by CCDS ID:4933.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4933.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000008391.4 ENSP00000008391.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000008391.4Link to Ensembl Protein Viewer:ENSP00000008391.4Re-query CCDS DB by Nucleotide ID:ENST00000008391Re-query CCDS DB by Protein ID:ENSP00000008391
Original member Current member NCBI NM_172238.4 NP_758438.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_172238.4Link to Protein Sequence:NP_758438.2Re-query CCDS DB by Nucleotide ID:NM_172238Re-query CCDS DB by Protein ID:NP_758438Link to BLAST:NP_758438.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758438.2 452 Q7Z6R9 452 100% 0 0

Chromosomal Locations for CCDS 4933.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 50714056 50714094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50715116 50715613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50719090 50719150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50728856 50729021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50729194 50729312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50745107 50745248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50751211 50751324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50772645 50772864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGTCAACTACCTTTCCGGGACTAGTCCACGATGCCGAGATACGTCACGACGGATCAAACAGCTACCGTT
TGATGCAGCTTGGCTGTCTGGAGTCAGTAGCCAATTCCACTGTCGCCTATTCCTCCTCCTCTCCTTTAAC
TTACTCCACCACCGGCACCGAGTTTGCGTCCCCCTACTTCTCCACTAACCACCAGTACACCCCGCTCCAC
CACCAGTCCTTCCATTACGAGTTTCAGCACAGCCACCCGGCCGTCACCCCCGACGCCTACTCTCTGAACT
CTCTCCACCACTCGCAACAGTACTACCAGCAGATCCACCACGGGGAGCCCACCGACTTTATTAACCTGCA
CAATGCGCGGGCGCTCAAGTCGTCCTGCCTGGACGAGCAGAGGCGGGAGCTGGGCTGCCTCGATGCCTAC
CGCCGCCATGACCTGTCCCTCATGAGCCATGGCTCTCAGTATGGAATGCACCCAGATCAAAGACTCCTGC
CAGGGCCCAGCCTGGGGCTGGCCGCCGCGGGAGCAGACGACTTGCAGGGCTCTGTGGAGGCCCAGTGTGG
GCTTGTTCTCAATGGCCAAGGTGGAGTGATAAGAAGAGGTGGCACCTGTGTGGTCAACCCCACAGACTTA
TTTTGCTCTGTCCCTGGCCGTTTGTCCCTTCTTAGTTCTACTTCCAAATACAAGGTGACCATTGCTGAGG
TAAAGAGGCGCCTCTCCCCACCTGAGTGCCTCAATGCTTCACTCTTGGGAGGCATTTTGAGAAGAGCAAA
ATCAAAGAATGGGGGCCGCTGCCTGAGAGAGAAATTGGATAGGCTTGGCTTAAACTTACCAGCAGGAAGA
CGGAAAGCAGCTAATGTCACCCTCCTTACTTCCTTGGTTGAAGGGGAGGCTTTGCACTTGGCTCGGGATT
TTGGCTACACTTGTGAAACAGAGTTTCCAGCCAAAGCAGTAGGAGAACATCTTGCCAGACAACATATGGA
ACAGAAAGAACAGACAGCAAGAAAAAAGATGATCCTGGCGACCAAACAAATCTGTAAAGAATTCCAAGAC
CTCTTGAGCCAAGATAGATCACCACTGGGATCCTCCAGACCCACTCCAATTCTAGACCTTGACATCCAGA
GACATTTAACACATTTCAGTTTGATCACTCATGGCTTTGGGACTCCGGCAATATGTGCAGCTCTAAGCAC
TTTCCAAACAGTTCTCAGTGAAATGCTGAACTACTTGGAAAAACACACTACTCACAAGAACGGCGGAGCG
GCGGATTCTGGCCAAGGACATGCCAACTCGGAGAAAGCTCCCCTGCGGAAAACTTCAGAGGCTGCCGTGA
AAGAGGGCAAAACAGAAAAGACAGACTAG

Translation (452 aa):
MSTTFPGLVHDAEIRHDGSNSYRLMQLGCLESVANSTVAYSSSSPLTYSTTGTEFASPYFSTNHQYTPLH
HQSFHYEFQHSHPAVTPDAYSLNSLHHSQQYYQQIHHGEPTDFINLHNARALKSSCLDEQRRELGCLDAY
RRHDLSLMSHGSQYGMHPDQRLLPGPSLGLAAAGADDLQGSVEAQCGLVLNGQGGVIRRGGTCVVNPTDL
FCSVPGRLSLLSSTSKYKVTIAEVKRRLSPPECLNASLLGGILRRAKSKNGGRCLREKLDRLGLNLPAGR
RKAANVTLLTSLVEGEALHLARDFGYTCETEFPAKAVGEHLARQHMEQKEQTARKKMILATKQICKEFQD
LLSQDRSPLGSSRPTPILDLDIQRHLTHFSLITHGFGTPAICAALSTFQTVLSEMLNYLEKHTTHKNGGA
ADSGQGHANSEKAPLRKTSEAAVKEGKTEKTD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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