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Report for CCDS31034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31034.1 Public Homo sapiens 1 SUSD4 24 110 108 CCDS HistoryNCBI Gene:55061Re-query CCDS DB by CCDS ID:31034.1Re-query CCDS DB by GeneID:55061See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31034.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344029.6 ENSP00000339926.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000344029.6Link to Ensembl Protein Viewer:ENSP00000339926.6Re-query CCDS DB by Nucleotide ID:ENST00000344029Re-query CCDS DB by Protein ID:ENSP00000339926
Original member Current member NCBI NM_001037175.3 NP_001032252.1 Accepted alive Link to Nucleotide Sequence:NM_001037175.3Link to Protein Sequence:NP_001032252.1Re-query CCDS DB by Nucleotide ID:NM_001037175Re-query CCDS DB by Protein ID:NP_001032252Link to BLAST:NP_001032252.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032252.1 290 Q5VX71-3 290 100% 0 0

Chromosomal Locations for CCDS 31034.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 223234952 223235100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223264630 223264818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223268502 223268675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223292439 223292651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223363278 223363425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGTATCATGGAATGAACCCGAGCAATGGAGATGGATTTCTAGAGCAGCAGCAGCAGCAGCAGCAACCTC
AGTCCCCCCAGAGACTCTTGGCCGTGATCCTGTGGTTTCAGCTGGCGCTGTGCTTCGGCCCTGCACAGCT
CACGGGCGGGTTCGATGACCTTCAAGTGTGTGCTGACCCCGGCATTCCCGAGAATGGCTTCAGGACCCCC
AGCGGAGGGGTTTTCTTTGAAGGCTCTGTAGCCCGATTTCACTGCCAAGACGGATTCAAGCTGAAGGGCG
CTACAAAGAGACTGTGTTTGAAGCATTTTAATGGAACCCTAGGCTGGATCCCAAGTGATAATTCCATCTG
TGTGCAAGAAGATTGCCGTATCCCTCAAATCGAAGATGCTGAGATTCATAACAAGACATATAGACATGGA
GAGAAGCTAATCATCACTTGTCATGAAGGATTCAAGATCCGGTACCCCGACCTACACAATATGGTTTCAT
TATGTCGCGATGATGGAACGTGGAATAATCTGCCCATCTGTCAAGGCTGCCTGAGACCTCTAGCCTCTTC
TAATGGCTATGTAAACATCTCTGAGCTCCAGACCTCCTTCCCGGTGGGGACTGTGATCTCCTATCGCTGC
TTTCCCGGATTTAAACTTGATGGGTCTGCGTATCTTGAGTGCTTACAAAACCTTATCTGGTCGTCCAGCC
CACCCCGGTGCCTTGCTCTGGAAGGAGGAAGACCTGAACATCTTTTCCCTGTCCTTTATTTCCCACACAT
CAGGTTGGCAGCTGCTGTGCTTTATTTTTGCCCTGTGTTAAAGTCCTCTCCCACCCCAGCACCTACCTGT
TCCTCAACTAGCACCACCACATCTCTGTTCTAA

Translation (290 aa):
MYHGMNPSNGDGFLEQQQQQQQPQSPQRLLAVILWFQLALCFGPAQLTGGFDDLQVCADPGIPENGFRTP
SGGVFFEGSVARFHCQDGFKLKGATKRLCLKHFNGTLGWIPSDNSICVQEDCRIPQIEDAEIHNKTYRHG
EKLIITCHEGFKIRYPDLHNMVSLCRDDGTWNNLPICQGCLRPLASSNGYVNISELQTSFPVGTVISYRC
FPGFKLDGSAYLECLQNLIWSSSPPRCLALEGGRPEHLFPVLYFPHIRLAAAVLYFCPVLKSSPTPAPTC
SSTSTTTSLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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