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Report for CCDS16451.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16451.1 Public Mus musculus 2 Syt13 23 108 98 CCDS HistoryNCBI Gene:80976Re-query CCDS DB by CCDS ID:16451.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16451.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028648.2 ENSMUSP00000028648.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028648.2Link to Ensembl Protein Viewer:ENSMUSP00000028648.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028648Re-query CCDS DB by Protein ID:ENSMUSP00000028648
Original member NCBI NM_030725.4 NP_109650.1 Updated not alive Link to Nucleotide Sequence:NM_030725.4Link to Protein Sequence:NP_109650.1Re-query CCDS DB by Nucleotide ID:NM_030725Re-query CCDS DB by Protein ID:NP_109650
Current member NCBI NM_030725.5 NP_109650.1 Accepted alive Link to Nucleotide Sequence:NM_030725.5Link to Protein Sequence:NP_109650.1Re-query CCDS DB by Nucleotide ID:NM_030725Re-query CCDS DB by Protein ID:NP_109650Link to BLAST:NP_109650.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109650.1 426 Q9EQT6 426 100% 0 0

Chromosomal Locations for CCDS 16451.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 92915187 92915369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92940753 92940978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92943052 92943186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92945914 92946215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92951302 92951431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92953363 92953667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGGTGCTGTCGGTGCCTGTGATCGCGCTGGGCGCCACGCTGGGCACTGCCACCAGCATCCTTGCGCTGT
GCGGGGTCACTTGCCTGTGCCGACACATGCACCCCAAGAAGGGGTTGCTGCCGCGGGACCGTGAGCCCGA
CCCGGAGAAGGCAAGGCCCGGTGTGCTTCAGGCGGCCCAACAGTTCAACATTAAAAAGTCCACGGAGCCT
GTCCAGCCCCGACCTCTCCTTAAGTTCCCGGACATCTATGGTCCCCGGCCAGCCGTGACGGCCCCAGAAG
TCATCAACTACGCAGACTACACCTTGGAGACCACAGAGGAGTCTGCTGCACCTGCCAGCCCCCAGGCCCA
GAGTGACAGTCGCCTCAAGAGGCAGGTCACAGAGGAGCTGTCCATCCGTCCTCAGAACGGTGTAGTTGAG
GATGTCTGTGTCATGGAGACCTGGAACCCAGAGAAGGCTGCCAGCTGGAACCAGGCCCCCAAACTCCACT
TCCGCCTGGACTATGACCAGAAGAAGGCTGAGTTATTTGTGACAAGCCTGGAAGCTGTCACCAGTGACCA
TGAAGGAGGCTGTGACTGTTACATCCAAGGCAGCGTGGCTGTCAAGACCGGCTCTGTGGAGGCACAGACA
GCTCTGAAGAAGCGGCAGCTGCACACAACCTGGGAGGAGGGCCTGGCCCTGCCCCTGGGTGAGGAAGAGC
TCCCCACAGCTACCCTGACACTCACCCTGCGCACCTGTGACCGCTTCTCCCGCCATAGTGTGATTGGGGA
ACTCCGCCTGGGCCTGGATGGAGCATCTGTACCCCTGGGGGCAGCACAGTGGGGTGAGCTGAAGACCACA
GCAAAGGAGCCATCTGCAGGGGCCGGGGAGGTCCTTCTGTCAATCAGCTACCTCCCAGCTGCCAATCGCC
TCCTGGTGGTGCTGATTAAAGCTAAGAACCTCCACTCCAACCAATCCAAGGAGCTGCTGGGCAAGGATGT
GTCTGTCAAGGTGACCTTGAAACACCAGGCTCAGAAGCTGAAGAAGAAACAGACAAAACGGGCCAAGCAC
AAGATCAACCCCGTGTGGAACGAGATGATCATGTTTGAGCTACCGGATGACTTGCTGCGGGCATCCAGTG
TGGAGCTGGAGGTGCTGGGCCAGGGCGAGGAGGGGCCGAGCTGCGAGCTGGGCCACTGCAGCCTAGGCCT
GCATGCCTCGGGCTCTGAGCGCAGCCACTGGGAGGAGATGCTAAAAAACCCACGCCGGCAGATCGCCATG
TGGCACCAACTGCACCTGTAG

Translation (426 aa):
MVLSVPVIALGATLGTATSILALCGVTCLCRHMHPKKGLLPRDREPDPEKARPGVLQAAQQFNIKKSTEP
VQPRPLLKFPDIYGPRPAVTAPEVINYADYTLETTEESAAPASPQAQSDSRLKRQVTEELSIRPQNGVVE
DVCVMETWNPEKAASWNQAPKLHFRLDYDQKKAELFVTSLEAVTSDHEGGCDCYIQGSVAVKTGSVEAQT
ALKKRQLHTTWEEGLALPLGEEELPTATLTLTLRTCDRFSRHSVIGELRLGLDGASVPLGAAQWGELKTT
AKEPSAGAGEVLLSISYLPAANRLLVVLIKAKNLHSNQSKELLGKDVSVKVTLKHQAQKLKKKQTKRAKH
KINPVWNEMIMFELPDDLLRASSVELEVLGQGEEGPSCELGHCSLGLHASGSERSHWEEMLKNPRRQIAM
WHQLHL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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