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Report for CCDS22044.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22044.1 Public Mus musculus 7 Tnfrsf23 23 108 98 CCDS HistoryNCBI Gene:79201Re-query CCDS DB by CCDS ID:22044.1Re-query CCDS DB by GeneID:79201See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22044.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000152703.1 ENSMUSP00000116742.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000152703.1Link to Ensembl Protein Viewer:ENSMUSP00000116742.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000152703Re-query CCDS DB by Protein ID:ENSMUSP00000116742
Original member Current member NCBI NM_024290.4 NP_077252.2 Accepted alive Link to Nucleotide Sequence:NM_024290.4Link to Protein Sequence:NP_077252.2Re-query CCDS DB by Nucleotide ID:NM_024290Re-query CCDS DB by Protein ID:NP_077252Link to BLAST:NP_077252.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077252.2 176 Q9ER63 176 100% 0 0

Chromosomal Locations for CCDS 22044.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 143668543 143668592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143669982 143670055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143670832 143670943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143679945 143680073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143681460 143681550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143685782 143685856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGGTTACCTTCAGCCACGTCTCCAGTCTGAGTCACTGGTTCCTCTTGCTGCTGCTGCTGAATCTGTTCT
TGCCGGTAATATTTGCTATGCCTGAATCATACTCCTTCAACTGTCCCGATGGTGAATACCAGTCTAATGA
TGTCTGTTGCAAGACCTGTCCCTCAGGTACATTTGTCAAGGCGCCCTGCAAAATCCCCCATACTCAAGGA
CAATGTGAGAAGTGTCACCCAGGAACATTCACAGGGAAAGATAATGGCCTGCATGATTGTGAACTTTGCT
CCACCTGTGATAAAGACCAGAATATGGTGGCTGACTGTTCTGCCACCAGTGACCGGAAATGCGAGTGCCA
AATAGGTCTTTACTACTATGACCCAAAATTTCCGGAATCATGCCGCCCATGTACCAAGTGTCCCCAAGGA
ATCCCTGTCCTCCAGGAATGCAACTCCACAGCTAACACTGTGTGCAGTTCATCTGTTTCAAATCCCAGAA
ACTGGCTGTTCCTACTGATGCTAATTGTCTTCTGTATCTGA

Translation (176 aa):
MVTFSHVSSLSHWFLLLLLLNLFLPVIFAMPESYSFNCPDGEYQSNDVCCKTCPSGTFVKAPCKIPHTQG
QCEKCHPGTFTGKDNGLHDCELCSTCDKDQNMVADCSATSDRKCECQIGLYYYDPKFPESCRPCTKCPQG
IPVLQECNSTANTVCSSSVSNPRNWLFLLMLIVFCI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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