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Report for CCDS23937.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23937.1 Public Mus musculus 10 Mmp11 23 108 98 CCDS HistoryNCBI Gene:17385Re-query CCDS DB by CCDS ID:23937.1Re-query CCDS DB by GeneID:17385See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23937.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000924.12 ENSMUSP00000000924.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000924.12Link to Ensembl Protein Viewer:ENSMUSP00000000924.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000000924Re-query CCDS DB by Protein ID:ENSMUSP00000000924
Original member Current member EBI ENSMUST00000120281.7 ENSMUSP00000112940.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120281.7Link to Ensembl Protein Viewer:ENSMUSP00000112940.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120281Re-query CCDS DB by Protein ID:ENSMUSP00000112940
Original member Current member NCBI NM_001306184.1 NP_001293113.1 Accepted alive Link to Nucleotide Sequence:NM_001306184.1Link to Protein Sequence:NP_001293113.1Re-query CCDS DB by Nucleotide ID:NM_001306184Re-query CCDS DB by Protein ID:NP_001293113Link to BLAST:NP_001293113.1
Original member Current member NCBI NM_008606.3 NP_032632.1 Accepted alive Link to Nucleotide Sequence:NM_008606.3Link to Protein Sequence:NP_032632.1Re-query CCDS DB by Nucleotide ID:NM_008606Re-query CCDS DB by Protein ID:NP_032632Link to BLAST:NP_032632.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001293113.1 492 Q02853 492 100% 0 0
NP_032632.1 492 Q02853 492 100% 0 0

Chromosomal Locations for CCDS 23937.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 75923982 75924115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75925420 75925677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75926411 75926627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75926748 75926989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75927129 75927262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75927347 75927490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75928280 75928509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75932334 75932453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGGCACGGGCCGCCTGTCTCCTCCGCGCGATTTCGCGCGTCCTCCTGCTCCCGCTGCCTCTGCTGCTCC
TGTTGCTGCTGCTCCTGCCGTCGCCGCTGATGGCCCGGGCCAGGCCACCGGAGAGTCACCGTCATCACCC
TGTGAAGAAAGGGCCTCGGCTCCTGCATGCAGCTCTGCCTAATACCTTGACATCTGTCCCCGCGTCTCAT
TGGGTCCCTAGTCCTGCCGGTAGCTCCAGGCCTCTACGATGTGGTGTGCCCGACCTGCCTGATGTACTGA
ATGCCCGGAACCGACAGAAGCGCTTCGTCCTGTCAGGAGGACGCTGGGAGAAGACAGACCTCACCTATAG
GATCCTCCGGTTCCCATGGCAGCTTGTAAGGGAGCAAGTCCGGCAGACAGTGGCAGAGGCCCTCCAGGTA
TGGAGTGAAGTGACCCCACTCACTTTCACTGAGGTGCACGAGGGACGCGCTGACATCATGATCGACTTCG
CCAGGTACTGGCATGGTGACAACTTGCCGTTTGACGGGCCTGGGGGCATCCTGGCCCATGCCTTCTTCCC
TAAGACCCACCGAGAAGGGGATGTCCACTTTGACTATGATGAAACTTGGACTATTGGGGACAACCAGGGA
ACTGACCTGCTGCAAGTGGCGGCTCATGAATTTGGCCATGTTCTGGGGCTACAACACACCACAGCAGCTA
AGGCCCTCATGTCCCCTTTCTACACCTTCCGCTACCCTCTGAGCCTTAGCCCAGATGACCGAAGGGGCAT
CCAGCACCTCTATGGGCGGCCCCAGATGGCCCCCACCTCCCCCGCCCCAACTTTGAGCTCCCAGGCTGGG
ACAGATACCAATGAGATTGCACTGCTGGAGCCGGAAACCCCGCCAGATGTCTGTGAGACTTCCTTCGACG
CGGTTTCCACCATCCGAGGAGAGCTCTTCTTCTTCAAGGCAGGCTTTGTGTGGAGGCTGCGCAGTGGGCG
ACTGCAGCCCGGGTATCCTGCTTTGGCCTCTCGGCACTGGCAAGGACTGCCCAGCCCTGTGGATGCAGCT
TTTGAGGATGCCCAGGGCCAGATTTGGTTCTTCCAAGGTGCTCAGTACTGGGTATATGATGGTGAGAAGC
CAGTCCTAGGCCCTGCACCACTCTCCAAGCTGGGCCTGCAAGGGTCCCCAGTTCATGCCGCCTTGGTCTG
GGGTCCTGAGAAGAACAAGATCTACTTCTTCCGAGGTGGAGACTATTGGCGTTTCCACCCCAGAACCCAG
CGAGTGGACAATCCCGTGCCCCGGCGCTCCACTGACTGGCGAGGGGTACCTTCTGAGATTGATGCTGCCT
TCCAGGATGCTGAGGGCTATGCCTACTTCCTTCGTGGCCATCTCTACTGGAAGTTTGATCCCGTGAAGGT
GAAGGTCCTAGAAGGCTTTCCTCGCCCCGTAGGTCCTGACTTCTTTGACTGTGCTGAGCCTGCCAATACT
TTCCGCTGA

Translation (492 aa):
MARAACLLRAISRVLLLPLPLLLLLLLLLPSPLMARARPPESHRHHPVKKGPRLLHAALPNTLTSVPASH
WVPSPAGSSRPLRCGVPDLPDVLNARNRQKRFVLSGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQV
WSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQG
TDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFRYPLSLSPDDRRGIQHLYGRPQMAPTSPAPTLSSQAG
TDTNEIALLEPETPPDVCETSFDAVSTIRGELFFFKAGFVWRLRSGRLQPGYPALASRHWQGLPSPVDAA
FEDAQGQIWFFQGAQYWVYDGEKPVLGPAPLSKLGLQGSPVHAALVWGPEKNKIYFFRGGDYWRFHPRTQ
RVDNPVPRRSTDWRGVPSEIDAAFQDAEGYAYFLRGHLYWKFDPVKVKVLEGFPRPVGPDFFDCAEPANT
FR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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