NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26812.1 Public Mus musculus 14 Kctd6 23 108 98 CCDS HistoryNCBI Gene:71393Re-query CCDS DB by CCDS ID:26812.1Re-query CCDS DB by GeneID:71393See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26812.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022272.13 ENSMUSP00000022272.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022272.13Link to Ensembl Protein Viewer:ENSMUSP00000022272.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000022272Re-query CCDS DB by Protein ID:ENSMUSP00000022272
Original member Current member EBI ENSMUST00000170111.1 ENSMUSP00000129059.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170111.1Link to Ensembl Protein Viewer:ENSMUSP00000129059.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170111Re-query CCDS DB by Protein ID:ENSMUSP00000129059
Original member Current member NCBI NM_001305936.1 NP_001292865.1 Accepted alive Link to Nucleotide Sequence:NM_001305936.1Link to Protein Sequence:NP_001292865.1Re-query CCDS DB by Nucleotide ID:NM_001305936Re-query CCDS DB by Protein ID:NP_001292865Link to BLAST:NP_001292865.1
Original member Current member NCBI NM_001305937.1 NP_001292866.1 Accepted alive Link to Nucleotide Sequence:NM_001305937.1Link to Protein Sequence:NP_001292866.1Re-query CCDS DB by Nucleotide ID:NM_001305937Re-query CCDS DB by Protein ID:NP_001292866Link to BLAST:NP_001292866.1
Original member Current member NCBI NM_027782.3 NP_082058.1 Accepted alive Link to Nucleotide Sequence:NM_027782.3Link to Protein Sequence:NP_082058.1Re-query CCDS DB by Nucleotide ID:NM_027782Re-query CCDS DB by Protein ID:NP_082058Link to BLAST:NP_082058.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292865.1 237 Q8BNL5 237 100% 0 0
NP_001292866.1 237 Q8BNL5 237 100% 0 0
NP_082058.1 237 Q8BNL5 237 100% 0 0

Chromosomal Locations for CCDS 26812.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 8220194 8220220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8222187 8222873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGGATAATGGGGACTGGGGCTATATGATGAGTGACCCAGTCACATTAAATGTAGGTGGACACTTGTACA
CGACATCGCTTACCACGTTGACACGCTACCCGGATTCTATGCTTGGAGCTATGTTTGGGGGTGACTTCCC
CACAGCCCGAGACCCTCAAGGCAATTACTTCATTGATCGAGACGGACCGCTCTTCCGCTATGTCCTTAAC
TTCCTACGGACTTCAGAACTGACACTCCCCCTGGACTTTAAGGAGTTTGATCTGCTTCGGAAAGAGGCTG
ATTTCTACCAGATCGAACCCTTGATTCAGTGTCTCAATGACCCCAGGCCTCTGTATCCTATGGATACTTT
TGAAGAAGTCGTAGAGCTGTCTAGCACTCGGAAGCTTTCTAAATATTCCAATCCGGTGGCCGTCATCATC
ACCCAGTTAACCATCACCACAAAGGTCCACTCCTTACTCGAAGGCATCTCAAACTATTTCACCAAGTGGA
ATAAGCACATGATGGACACCAGAGACTGCCAGGTCTCCTTCACCTTTGGACCGTGCGATTACCACCAGGA
AGTCTCTCTCCGGGTCCATCTGATGGAGTACATCACGAAGCAAGGTTTCACGATCCGCAATACTCGGGTG
CATCACATGAGCGAGCGGGCCAATGAGAACACAGTAGAGCACAACTGGACTTTCTGTAGACTGGCCCGCA
AGACGGACGACTGA

Translation (237 aa):
MDNGDWGYMMSDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGGDFPTARDPQGNYFIDRDGPLFRYVLN
FLRTSELTLPLDFKEFDLLRKEADFYQIEPLIQCLNDPRPLYPMDTFEEVVELSSTRKLSKYSNPVAVII
TQLTITTKVHSLLEGISNYFTKWNKHMMDTRDCQVSFTFGPCDYHQEVSLRVHLMEYITKQGFTIRNTRV
HHMSERANENTVEHNWTFCRLARKTDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH