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Report for CCDS42878.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42878.2 Public Homo sapiens 20 PABPC1L 24 110 108 CCDS HistoryNCBI Gene:80336Re-query CCDS DB by CCDS ID:42878.2See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 42878.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217073.7 ENSP00000217073.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217073.7Link to Ensembl Protein Viewer:ENSP00000217073.3Re-query CCDS DB by Nucleotide ID:ENST00000217073Re-query CCDS DB by Protein ID:ENSP00000217073
Original member Current member NCBI NM_001372179.1 NP_001359108.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001372179.1Link to Protein Sequence:NP_001359108.1Re-query CCDS DB by Nucleotide ID:NM_001372179Re-query CCDS DB by Protein ID:NP_001359108Link to BLAST:NP_001359108.1

Chromosomal Locations for CCDS 42878.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 44910144 44910336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44912660 44912853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44916756 44916871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44918906 44919045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44919183 44919277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44921594 44921731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44924161 44924256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44930460 44930726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44932342 44932432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44933057 44933185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44935391 44935497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44936637 44936730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44938061 44938191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44938674 44938742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGAACGCCAGCGGTTCTGGCTACCCGCTTGCCTCGCTTTACGTGGGCGATCTGCACCCCGACGTGACCG
AGGCCATGCTCTATGAGAAGTTCTCTCCCGCCGGCCCCATCCTGTCCATCCGCGTGTGCCGCGATGTAGC
CACCCGGCGCTCGCTGGGCTACGCCTACATCAACTTCCAGCAGCCCGCGGACGCGGAGCGGGCACTGGAC
ACAATGAACTTTGAGATGCTCAAAGGCCAGCCTATTCGCATCATGTGGTCCCAGCGAGACCCAGGACTTC
GCAAGTCAGGTGTGGGCAACATCTTCATCAAGAACCTGGAGGACTCCATTGACAACAAGGCTTTATATGA
TACCTTCTCCACCTTTGGGAACATCCTCTCTTGCAAGGTGGCGTGTGACGAGCATGGCTCCCGGGGTTTC
GGCTTTGTCCATTTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACACCATGAATGGGATGCTGCTGA
ATGACCGCAAAGTCTTTGTGGGTCACTTCAAGTCTCGACGGGAGCGGGAGGCGGAGCTGGGGGCGCGGGC
CCTGGAGTTCACCAACATCTACGTGAAGAACCTCCCGGTGGATGTGGACGAGCAAGGCCTGCAGGACCTC
TTCTCCCAGTTTGGGAAAATGCTGAGTGTGAAGGTGATGAGGGACAACAGCGGCCACTCGCGGTGCTTTG
GCTTTGTCAACTTTGAGAAGCATGAGGAAGCCCAGAAGGCCGTGGTCCATATGAACGGGAAGGAGGTGAG
CGGGCGGCTGCTGTACGCGGGCCGGGCCCAAAAGCGCGTGGAGCGGCAGAATGAACTGAAGCGCAGGTTT
GAGCAGATGAAGCAGGACCGGCTGAGGCGTTACCAGGGTGTGAACTTGTATGTGAAGAATCTGGACGACT
CCATTGATGACGACAAACTGAGGAAAGAGTTCTCTCCCTATGGAGTAATTACCAGTGCGAAGGTGATGAC
AGAGGGTGGCCACAGCAAGGGGTTTGGCTTTGTGTGTTTTTCCTCCCCAGAAGAGGCGACAAAGGCCGTG
ACAGAGATGAACGGGCGCATCGTGGGCACCAAGCCACTCTACGTGGCACTGGCCCAGCGCAAAGAGGAGC
GGAAGGCCATCTTGACCAACCAGTACATGCAGCGCCTCTCCACCATGCGGACCCTGAGCAACCCCCTCCT
GGGCTCCTTTCAGCAGCCCTCCAGCTACTTCCTGCCTGCCATGCCCCAGCCTCCAGCCCAGGCTGCATAC
TATGGCTGTGGCCCAGTGACACCCACCCAGCCTGCCCCCAGGTGGACATCCCAGCCACCTAGACCTTCCT
CTGCCTACCCTCCAGGTGCCTCAATGGTCCGGCCACCAGTTGTGCCTCGGCGCCCCCCGGCCCACATCAG
CAGTGTCAGGCAGGCCTCCACCCAGGTGCCACGCACGGTGCCTCATACCCAGAGAGTAGCCAACATTGGT
ACTCAGACCACAGGACCCAGTGGGGTAGGATGCTGTACACCAGGCCGGCCGCTCCTGCCGTGCAAATGTT
CCTCAGCAGCACATAGCACCTATCGGGTCCAGGAGCCGGCTGTGCACATCCCAGGACAGGAGCCCCTGAC
CGCGTCCATGCTGGCTGCGGCGCCCCTGCATGAGCAAAAGCAGATGATTGGGGAGCGTCTCTACCCCCTT
ATCCATGATGTCCACACCCAGCTGGCTGGCAAGATCACGGGCATGCTGCTGGAGATTGACAACTCAGAGC
TGTTGCTCATGCTGGAGTCTCCAGAATCCCTCCATGCCAAGATAGACGAGGCAGTGGCCGTGCTGCAGGC
ACACCAGGCTATGGAGCAGCCGAAGGCGTACATGCACTGA

Translation (619 aa):
MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD
TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGF
GFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDL
FSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRF
EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAV
TEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAY
YGCGPVTPTQPAPRWTSQPPRPSSAYPPGASMVRPPVVPRRPPAHISSVRQASTQVPRTVPHTQRVANIG
TQTTGPSGVGCCTPGRPLLPCKCSSAAHSTYRVQEPAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPL
IHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQAHQAMEQPKAYMH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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