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Report for CCDS55405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55405.1 Public Homo sapiens X EFHC2 24 110 108 CCDS HistoryNCBI Gene:80258Re-query CCDS DB by CCDS ID:55405.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55405.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000420999.2 ENSP00000404232.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000420999.2Link to Ensembl Protein Viewer:ENSP00000404232.2Re-query CCDS DB by Nucleotide ID:ENST00000420999Re-query CCDS DB by Protein ID:ENSP00000404232
Original member Current member NCBI NM_025184.4 NP_079460.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025184.4Link to Protein Sequence:NP_079460.2Re-query CCDS DB by Nucleotide ID:NM_025184Re-query CCDS DB by Protein ID:NP_079460Link to BLAST:NP_079460.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079460.2 749 Q5JST6-1 749 100% 0 0

Chromosomal Locations for CCDS 55405.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 44148795 44148896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 44163922 44164027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 44176292 44176384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 44178367 44178564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 44229649 44229779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 44232481 44232677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 44235305 44235447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 44242121 44242289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 44248272 44248410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 44248803 44248916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 44250194 44250445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 44261075 44261298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 44272686 44272836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 44312568 44312756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 44343547 44343588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2250 nt):
ATGGCCCTGCCTCTGCTGCCGGGCAACAGCTTCAACCGCAACGTGGGAAAGGAGAAGTTTCACAAATCCC
AACATTGGGGCTTTTGCAACAATGTTATGATGTTGGTGAGTGATGAAAAGCCTGGAATAGGTGGAGAACC
ACTTCTGGGGCAAAAGATAAAGCCTAAATGTAGCATATATCCTAAAGGAGATGGAAGTGATGTACCATCA
TGGGTAGCCTTTGATAAACAGGTATTATCTTTTGATGCCTATTTGGAAGAGGAAGTACTTGATAAAAGCC
AAACCAACTACAGAATAAGATACTATAAAATCTACTTCTACCCTGAAGATGACACAATTCAAGTAAATGA
ACCAGAGGTGAAAAATAGTGGATTACTTCAAGGGACTTCTATCCGGCGTCATCGGATTACTCTTCCGCCT
CCTGATGAGGATCAGTTTTATACTGTGTATCATTTTAATGTCGGCACAGAGGTTGTCTTCTATGGCCGGA
CATTCAAGATTTATGACTGTGATGCATTCACAAGAAACTTTTTGAGGAAAATAGGGGTCAAAGTGAATCC
CCCAGTGCAATGTCCAGAAGATCCTTACATGAAGATTCGGAGAGAGGTTGTAGAACACGTAGAGCCCTTA
CGTCCCTACGAATCCCTCGACACCCTGAAACAGTTCCTCCAGTATCATGGCAAGATTTTGTGTTTCTTCT
GCCTGTGGGATGACTCAGTCTCAATGTTTGGAGACCGTAGAGAACTCATCCTGCATTACTTCTTGTGTGA
TGATACTATTGAAATCAAAGAATTGCTTCCACACAGCTCAGGCCGAGATGCTCTAAAAATGTTCCTCCGG
AGGAGTAAGCTACCCAAGAATTGCCCACCTAGAGTCTATCAACCAGGCCAGATAACAGATCGAGCAGTTC
TCAATTCATATGGTGACTTTATAAAGAACCAAGCGGATGGCTACCTGTTCGATAGATATAAGCTAGGAAA
AGTAGACCAAGAGTTTTACAAAGATAGTGACCTGTCCCTAGGAGTCACCATCAATGTGTGGGGAAGAAAA
GTGCTCCTTTATGACTGTGATGAATTTACGAAGTCTTATTATAAGTCTAAATATGGAATTGAGAACTTTA
CCTCAGTTTCATGCAAGCCTCCTTCTCCTCCTCCAAAAATAGAAAGGAAATTTCCACCTTACAACGGTTT
TGGTTCTGAAGAGGATTCTCTCCGTAACTGCATAGACCTCAAGCCCACACCTCATCGGAGGAACTTCAAG
AAGTTTATGGAAAAAGACAGCTATGGCTCCAAAAGCAATATACTCCGTTTTTTTGCAAAACTAGTCACAG
ACAAATGTGTTGACTTGGACAGGATGTTTGTTATTTCATATTATCTCGGTGATGACACCATTTCAGTGTT
TGAACCTATAGAGAGGAATTCAGGAATTGCTGGTGGGATGTTCTTGAAAAGAAGTCGCGTTAAGAAGCCT
GGACAAGAAGTCTTTAAAAGTGAACTATCTGAATATATCAAGGCCGAGGAGCTGTACATTGGAGTCACGG
TGAATGTGAATGGTTACCTATTTCGTTTGCTCAATGCTGATGAGTATACCTTAAACTACATGGAGCAGAA
TACAGATAAGTATCCTTTCAGTAACCTCAAACTTGCCCTACAAAAGCTGAAGCAAGAAGAAGGAAAATCC
AGAGAGCTCAAGCAGGTATTTAAAGCTGCTGACTCTAAGCACACAAATATGGTGGATTATAATACATTCA
GAGACATATTGATGTCTTTGACTGTTGGAAACCTTGCAGAGCAAGAATTTGTAACCATTGCACGTCACTA
CCGTGTGCCTGAGGGCACATGTTCAGATATGGATTTCTTAATCGCACTGGCCCACGAAAAGTTCAAGAAA
AATATGTTTGAGAATTTCGACACTTTCATTTATTCCTGTGTGTATGAAGATCGAGAAAAAAAAAATGTAT
TACCCACCAAAGACATTAAAAGGCTGTGCAAATCCTCCAGATTACCTTTGAGTGATGATCTTCTAGAATC
CTTATTGTCAAGGTTTGAAGACAGTGAAAAACAAATAGATTATAAGTCATTTTTCTCTGCCCTGAACTGG
AGAAAGAATCCAGTGCCTGAATTGCAACCAGCATCATACCTTAAAGAGAGATGTGAAGATGTTTGGCTTG
GTATGCCATCACCTATTCCTGCGAAATACATTGACTACTGGACCTTTTTGAAGGACGCGTTTGGCTTAGA
GGAGGAATAA

Translation (749 aa):
MALPLLPGNSFNRNVGKEKFHKSQHWGFCNNVMMLVSDEKPGIGGEPLLGQKIKPKCSIYPKGDGSDVPS
WVAFDKQVLSFDAYLEEEVLDKSQTNYRIRYYKIYFYPEDDTIQVNEPEVKNSGLLQGTSIRRHRITLPP
PDEDQFYTVYHFNVGTEVVFYGRTFKIYDCDAFTRNFLRKIGVKVNPPVQCPEDPYMKIRREVVEHVEPL
RPYESLDTLKQFLQYHGKILCFFCLWDDSVSMFGDRRELILHYFLCDDTIEIKELLPHSSGRDALKMFLR
RSKLPKNCPPRVYQPGQITDRAVLNSYGDFIKNQADGYLFDRYKLGKVDQEFYKDSDLSLGVTINVWGRK
VLLYDCDEFTKSYYKSKYGIENFTSVSCKPPSPPPKIERKFPPYNGFGSEEDSLRNCIDLKPTPHRRNFK
KFMEKDSYGSKSNILRFFAKLVTDKCVDLDRMFVISYYLGDDTISVFEPIERNSGIAGGMFLKRSRVKKP
GQEVFKSELSEYIKAEELYIGVTVNVNGYLFRLLNADEYTLNYMEQNTDKYPFSNLKLALQKLKQEEGKS
RELKQVFKAADSKHTNMVDYNTFRDILMSLTVGNLAEQEFVTIARHYRVPEGTCSDMDFLIALAHEKFKK
NMFENFDTFIYSCVYEDREKKNVLPTKDIKRLCKSSRLPLSDDLLESLLSRFEDSEKQIDYKSFFSALNW
RKNPVPELQPASYLKERCEDVWLGMPSPIPAKYIDYWTFLKDAFGLEEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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