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Report for CCDS11314.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11314.1 Public Homo sapiens 17 GGNBP2 24 110 108 CCDS HistoryNCBI Gene:79893Re-query CCDS DB by CCDS ID:11314.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11314.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000613102.5 ENSP00000478220.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000613102.5Link to Ensembl Protein Viewer:ENSP00000478220.1Re-query CCDS DB by Nucleotide ID:ENST00000613102Re-query CCDS DB by Protein ID:ENSP00000478220
Original member Current member NCBI NM_024835.5 NP_079111.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024835.5Link to Protein Sequence:NP_079111.1Re-query CCDS DB by Nucleotide ID:NM_024835Re-query CCDS DB by Protein ID:NP_079111Link to BLAST:NP_079111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079111.1 697 Q9H3C7-1 697 100% 0 0

Chromosomal Locations for CCDS 11314.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36545725 36545817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36554820 36554900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36557083 36557336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36560773 36560871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36567663 36567776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36577983 36578186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36579245 36579419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36581344 36581538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36585300 36585450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36585840 36585965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36586050 36586198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36586997 36587245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36589208 36589411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2094 nt):
ATGGCGCGACTCGTGGCAGTGTGCAGGGACGGGGAGGAGGAGTTCCCCTTCGAGAGGAGGCAGATTCCCC
TCTACATAGACGACACCCTGACGATGGTGATGGAATTTCCTGATAATGTGTTAAATCTCGATGGACATCA
GAATAATGGTGCACAGCTAAAGCAGTTCATTCAGCGACATGGTATGCTTAAGCAACAGGATCTAAGTATT
GCCATGGTGGTGACATCACGCGAAGTCCTGAGTGCACTTTCTCAGCTTGTCCCATGTGTTGGTTGTCGTC
GCAGTGTGGAGCGTCTCTTTTCCCAGCTTGTAGAGTCTGGAAATCCTGCTCTTGAACCCCTAACAGTAGG
GCCCAAGGGAGTCCTGTCTGTAACTAGAAGCTGCATGACTGATGCAAAGAAGCTTTATACATTATTTTAT
GTACATGGGTCCAAACTAAATGACATGATAGATGCTATTCCAAAAAGTAAGAAGAATAAGAGATGTCAGT
TGCACTCCTTAGATACGCACAAGCCAAAACCTTTGGGAGGTTGTTGGATGGATGTATGGGAACTAATGTC
GCAGGAATGCAGGGATGAAGTAGTTTTAATTGACTCGAGTTGTCTTTTAGAAACACTAGAAACATATCTG
CGAAAACACAGGTTTTGCACTGATTGCAAAAATAAAGTCCTCCGAGCATACAATATCCTTATTGGTGAAC
TTGACTGCAGCAAAGAAAAGGGCTACTGTGCTGCACTTTATGAAGGCTTGCGGTGCTGTCCACATGAACG
ACACATACATGTTTGCTGTGAAACAGACTTCATTGCACATCTTTTGGGTCGTGCTGAGCCAGAGTTCGCA
GGAGGGCGAAGAGAAAGGCATGCAAAGACAATAGATATAGCTCAAGAAGAAGTTCTGACCTGCTTGGGAA
TTCATCTTTATGAAAGACTGCATCGAATCTGGCAGAAGCTACGGGCAGAAGAGCAGACATGGCAGATGCT
TTTCTATCTTGGTGTTGATGCTTTACGCAAGAGTTTTGAGATGACCGTGGAAAAAGTACAGGGTATTAGC
AGATTGGAACAACTTTGTGAGGAATTTTCAGAAGAGGAACGAGTAAGAGAACTCAAGCAAGAAAAGAAAC
GCCAAAAACGGAAGAATAGACGAAAAAATAAGTGTGTGTGTGATATTCCTACTCCCTTACAAACAGCAGA
TGAAAAGGAAGTAAGCCAAGAGAAGGAAACAGACTTCATAGAAAATAGCAGCTGCAAAGCCTGTGGCAGC
ACTGAAGATGGTAATACTTGTGTAGAAGTAATTGTTACCAATGAAAATACATCATGTACCTGTCCTAGCA
GTGGCAATCTTTTGGGGTCCCCTAAAATAAAGAAAGGCTTATCTCCACACTGTAATGGTAGTGATTGTGG
ATATTCATCTAGCATGGAAGGGAGTGAAACAGGTTCTCGGGAGGGTTCGGATGTTGCCTGCACTGAAGGC
ATTTGTAATCATGATGAACACGGTGATGACTCTTGTGTTCATCACTGTGAAGACAAAGAGGATGATGGTG
ATAGTTGTGTTGAATGTTGGGCAAATTCTGAAGAGAACGACACAAAAGGAAAAAATAAAAAGAAGAAGAA
GAAAAGCAAGATACTGAAATGTGATGAACATATCCAGAAGCTTGGAAGCTGTATTACAGATCCAGGTAAT
CGAGAGACCTCAGGAAATACCATGCACACAGTGTTTCACCGTGACAAGACCAAAGATACACATCCTGAAA
GCTGTTGCAGCTCTGAAAAGGGTGGGCAGCCATTGCCTTGGTTTGAGCATAGGAAAAATGTACCACAGTT
TGCAGAACCTACAGAAACGTTGTTTGGTCCCGATTCCGGAAAAGGTGCCAAGAGCTTAGTTGAACTCCTT
GATGAGTCTGAATGTACTTCAGATGAGGAAATCTTTATCTCACAAGATGAAATACAGTCATTTATGGCTA
ATAACCAGTCTTTCTACAGCAATAGAGAACAATACCGACAGCATCTGAAGGAGAAATTTAATAAATACTG
CCGGTTAAATGATCACAAGAGGCCCATTTGTAGTGGCTGGTTGACAACGGCTGGAGCAAATTAA

Translation (697 aa):
MARLVAVCRDGEEEFPFERRQIPLYIDDTLTMVMEFPDNVLNLDGHQNNGAQLKQFIQRHGMLKQQDLSI
AMVVTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVLSVTRSCMTDAKKLYTLFY
VHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDVWELMSQECRDEVVLIDSSCLLETLETYL
RKHRFCTDCKNKVLRAYNILIGELDCSKEKGYCAALYEGLRCCPHERHIHVCCETDFIAHLLGRAEPEFA
GGRRERHAKTIDIAQEEVLTCLGIHLYERLHRIWQKLRAEEQTWQMLFYLGVDALRKSFEMTVEKVQGIS
RLEQLCEEFSEEERVRELKQEKKRQKRKNRRKNKCVCDIPTPLQTADEKEVSQEKETDFIENSSCKACGS
TEDGNTCVEVIVTNENTSCTCPSSGNLLGSPKIKKGLSPHCNGSDCGYSSSMEGSETGSREGSDVACTEG
ICNHDEHGDDSCVHHCEDKEDDGDSCVECWANSEENDTKGKNKKKKKKSKILKCDEHIQKLGSCITDPGN
RETSGNTMHTVFHRDKTKDTHPESCCSSEKGGQPLPWFEHRKNVPQFAEPTETLFGPDSGKGAKSLVELL
DESECTSDEEIFISQDEIQSFMANNQSFYSNREQYRQHLKEKFNKYCRLNDHKRPICSGWLTTAGAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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