NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4853.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4853.2 Public Homo sapiens 6 TREML2 24 110 108 CCDS HistoryNCBI Gene:79865Re-query CCDS DB by CCDS ID:4853.2See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 4853.1
The coding region has been updated to shorten the N-terminus to one that is more supported by available homology data. The shorter protein contains a predicted signal peptide sequence that is not present in the longer protein.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4853.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000483722.2 ENSP00000418767.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000483722.2Link to Ensembl Protein Viewer:ENSP00000418767.1Re-query CCDS DB by Nucleotide ID:ENST00000483722Re-query CCDS DB by Protein ID:ENSP00000418767
Original member Current member NCBI NM_024807.4 NP_079083.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024807.4Link to Protein Sequence:NP_079083.2Re-query CCDS DB by Nucleotide ID:NM_024807Re-query CCDS DB by Protein ID:NP_079083Link to BLAST:NP_079083.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079083.2 321 Q5T2D2 321 100% 0 0

Chromosomal Locations for CCDS 4853.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 41192427 41192506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41192801 41192901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41194425 41194833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41198109 41198429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41200954 41201008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGCCCCAGCCTTCCTGCTGCTGCTGCTGCTGTGGCCACAGGGTTGCGTCTCAGGCCCCTCTGCTGACA
GTGTATACACAAAAGTGAGGCTCCTTGAAGGGGAGACTCTGTCTGTGCAGTGCTCCTATAAGGGCTACAA
AAACCGCGTGGAGGGCAAGGTTTGGTGCAAAATCAGGAAGAAGAAGTGTGAGCCTGGCTTTGCCCGAGTC
TGGGTGAAAGGGCCCCGCTACTTGCTGCAGGACGATGCCCAGGCCAAGGTGGTCAACATCACCATGGTGG
CCCTCAAGCTCCAGGACTCAGGCCGATACTGGTGCATGCGCAACACCTCTGGGATCCTGTACCCCTTGAT
GGGCTTCCAGCTGGATGTGTCTCCAGCTCCCCAAACTGAGAGGAACATTCCTTTCACACATCTGGACAAC
ATCCTCAAGAGTGGAACTGTCACAACTGGCCAAGCCCCTACCTCAGGCCCTGATGCCCCTTTTACCACTG
GTGTGATGGTGTTCACCCCAGGACTCATCACCTTGCCTAGGCTCTTAGCCTCCACCAGACCTGCCTCCAA
GACAGGCTACAGCTTCACTGCTACCAGCACCACCAGCCAGGGACCCAGGAGGACCATGGGGTCCCAGACA
GTGACCGCGTCTCCCAGCAATGCCAGGGACTCCTCTGCTGGCCCAGAATCCATCTCCACTAAGTCTGGGG
ACCTCAGCACCAGATCGCCCACCACAGGGCTCTGCCTCACCAGCAGATCTCTCCTCAACAGACTACCCTC
CATGCCCTCCATCAGGCACCAGGATGTTTACTCCACTGTGCTTGGGGTGGTGCTGACCCTCCTGGTGCTG
ATGCTGATCATGGTCTATGGGTTTTGGAAGAAGAGACACATGGCAAGCTACAGCATGTGCAGCGATCCTT
CTACACGTGACCCACCTGGAAGACCAGAGCCCTATGTGGAAGTCTACTTGATCTGA

Translation (321 aa):
MAPAFLLLLLLWPQGCVSGPSADSVYTKVRLLEGETLSVQCSYKGYKNRVEGKVWCKIRKKKCEPGFARV
WVKGPRYLLQDDAQAKVVNITMVALKLQDSGRYWCMRNTSGILYPLMGFQLDVSPAPQTERNIPFTHLDN
ILKSGTVTTGQAPTSGPDAPFTTGVMVFTPGLITLPRLLASTRPASKTGYSFTATSTTSQGPRRTMGSQT
VTASPSNARDSSAGPESISTKSGDLSTRSPTTGLCLTSRSLLNRLPSMPSIRHQDVYSTVLGVVLTLLVL
MLIMVYGFWKKRHMASYSMCSDPSTRDPPGRPEPYVEVYLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH