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Report for CCDS10190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10190.1 Public Homo sapiens 15 SNX22 24 110 108 CCDS HistoryNCBI Gene:79856Re-query CCDS DB by CCDS ID:10190.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10190.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325881.9 ENSP00000323435.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325881.9Link to Ensembl Protein Viewer:ENSP00000323435.4Re-query CCDS DB by Nucleotide ID:ENST00000325881Re-query CCDS DB by Protein ID:ENSP00000323435
Original member Current member NCBI NM_024798.3 NP_079074.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024798.3Link to Protein Sequence:NP_079074.2Re-query CCDS DB by Nucleotide ID:NM_024798Re-query CCDS DB by Protein ID:NP_079074Link to BLAST:NP_079074.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079074.2 193 Q96L94-1 193 100% 0 0

Chromosomal Locations for CCDS 10190.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 64151776 64151850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 64152243 64152326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 64152638 64152742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 64153245 64153339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 64153652 64153684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 64153935 64154002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 64154387 64154508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGCTGGAAGTTCACATCCCGTCGGTGGGGCCCGAGGCCGAGGGGCCCAGGCAGAGCCCGGAGAAAAGCC
ACATGGTGTTCCGAGTGGAGGTGCTGTGCAGCGGGCGCAGACACACGGTGCCAAGGCGCTACAGCGAGTT
CCACGCGCTGCACAAGCGGATCAAGAAGCTGTACAAAGTGCCCGACTTCCCCTCGAAACGCCTGCCCAAC
TGGAGGACCAGAGGGTTGGAACAGCGCCGGCAGGGCTTGGAGGCTTACATCCAGGGCATCCTGTACCTGA
ACCAGGAGGTGCCCAAGGAGTTACTGGAATTCCTGAGACTTCGGCACTTCCCCACAGACCCCAAGGCTAG
CAACTGGGGCACCCTGAGGGAGTTCCTGCCTGGCGACAGCAGCTCCCAGCAGCACCAGCGGCCTGTCCTG
AGCTTCCATGTGGATCCCTATGTTTGCAACCCCTCCCCAGAGTCGCTGCCCAACGTGGTGGTGAATGGTG
TGCTCCAGGGCCTCTACAGCTTCAGCATCAGCCCAGATAAAGCCCAGCCAAAGGCGGCCTGTCACCCTGC
TCCTCTGCCACCGATGCCCTGA

Translation (193 aa):
MLEVHIPSVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLYKVPDFPSKRLPN
WRTRGLEQRRQGLEAYIQGILYLNQEVPKELLEFLRLRHFPTDPKASNWGTLREFLPGDSSSQQHQRPVL
SFHVDPYVCNPSPESLPNVVVNGVLQGLYSFSISPDKAQPKAACHPAPLPPMP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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