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Report for CCDS41302.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41302.1 Public Homo sapiens 1 ZMYM1 24 110 108 CCDS HistoryNCBI Gene:79830Re-query CCDS DB by CCDS ID:41302.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41302.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359858.9 ENSP00000352920.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359858.9Link to Ensembl Protein Viewer:ENSP00000352920.4Re-query CCDS DB by Nucleotide ID:ENST00000359858Re-query CCDS DB by Protein ID:ENSP00000352920
Original member Current member EBI ENST00000373330.1 ENSP00000362427.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373330.1Link to Ensembl Protein Viewer:ENSP00000362427.1Re-query CCDS DB by Nucleotide ID:ENST00000373330Re-query CCDS DB by Protein ID:ENSP00000362427
Original member Current member EBI ENST00000611874.4 ENSP00000482579.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611874.4Link to Ensembl Protein Viewer:ENSP00000482579.1Re-query CCDS DB by Nucleotide ID:ENST00000611874Re-query CCDS DB by Protein ID:ENSP00000482579
Original member Current member EBI ENST00000650449.1 ENSP00000496876.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650449.1Link to Ensembl Protein Viewer:ENSP00000496876.1Re-query CCDS DB by Nucleotide ID:ENST00000650449Re-query CCDS DB by Protein ID:ENSP00000496876
Original member Current member NCBI NM_001289088.2 NP_001276017.1 Accepted alive Link to Nucleotide Sequence:NM_001289088.2Link to Protein Sequence:NP_001276017.1Re-query CCDS DB by Nucleotide ID:NM_001289088Re-query CCDS DB by Protein ID:NP_001276017Link to BLAST:NP_001276017.1
Original member Current member NCBI NM_001289090.2 NP_001276019.1 Accepted alive Link to Nucleotide Sequence:NM_001289090.2Link to Protein Sequence:NP_001276019.1Re-query CCDS DB by Nucleotide ID:NM_001289090Re-query CCDS DB by Protein ID:NP_001276019Link to BLAST:NP_001276019.1
Original member Current member NCBI NM_024772.5 NP_079048.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024772.5Link to Protein Sequence:NP_079048.3Re-query CCDS DB by Nucleotide ID:NM_024772Re-query CCDS DB by Protein ID:NP_079048Link to BLAST:NP_079048.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276017.1 1142 Q5SVZ6 1142 100% 0 0
NP_001276019.1 1142 Q5SVZ6 1142 100% 0 0
NP_079048.3 1142 Q5SVZ6 1142 100% 0 0

Chromosomal Locations for CCDS 41302.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 35093988 35094083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35095819 35095891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35097317 35097566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35104295 35104469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35104557 35104769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35110294 35110447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35111772 35111912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35112087 35112130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35112977 35115259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3429 nt):
ATGAAAGAACCACTTTTAGGTGGTGAGTGTGACAAGGCAGTGGCATCACAGCTGGGGCTGCTAGATGAAA
TTAAGACAGAACCCGACAATGCTCAAGAGTATTGTCATAGGCAACAGTCCAGAACTCAGGAGAATGAACT
GAAAATAAATGCTGTGTTTTCAGAGAGTGCTTCACAGTTGACTGCAGGCATTCAGCTTTCTCTGGCATCA
TCTGGCGTGAATAAAATGCTTCCTTCAGTTTCAACCACAGCTATTCAGGTTTCCTGTGCTGGTTGTAAAA
AAATTCTCCAGAAGGGGCAAACTGCTTATCAGAGGAAAGGATCTGCTCAACTTTTCTGCTCCATACCATG
CATCACTGAATACATTTCATCTGCCAGTTCACCAGTTCCTTCTAAGAGAACTTGTTCAAACTGCTCAAAA
GACATTTTAAATCCAAAGGATGTGATTAGTGTCCAGCTGGAAGACACTACCTCTTGCAAAACTTTTTGCA
GCCTATCTTGTCTTTCATCATATGAAGAAAAAAGAAAACCATTTGTTACCATATGTACTAATAGCATTTT
GACCAAGTGCAGCATGTGCCAGAAGACTGCTATTATTCAGTATGAAGTAAAATACCAAAATGTGAAACAT
AATCTTTGCAGTAATGCCTGCCTTTCAAAGTTTCACTCTGCTAACAACTTCATCATGAACTGCTGTGAGA
ACTGTGGCACTTACTGTTACACCAGCTCTAGTCTGTCCCACATACTTCAGATGGAAGGACAGTCTCATTA
CTTTAATAGTTCAAAGAGTATTACAGCATATAAGCAGAAACCTGCCAAACCACTTATATCTGTTCCTTGC
AAACCATTGAAGCCCTCAGATGAAATGATTGAGACTACGAGTGATTTGGGGAAGACAGAGCTTTTCTGCT
CTATTAATTGTTTCTCTGCATACAGTAAAGCTAAGATGGAATCTTCTTCAGTAAGTGTTGTTTCTGTGGT
GCATGATACTTCAACAGAGCTTCTTTCTCCAAAGAAAGATACGACTCCAGTTATAAGCAATATAGTGTCA
TTGGCAGACACCGATGTTGCCTTGCCCATCATGAACACTGATGTCTTACAAGATACAGTTTCTTCAGTAA
CAGCAACAGCAGATGTCATTGTGGATCTTTCTAAGAGTTCACCTAGTGAACCCAGTAATGCTGTTGCTAG
TAGTAGTACGGAACAGCCAAGCGTTTCACCATCTTCATCAGTATTCAGTCAGCATGCAATTGGTTCCAGT
ACAGAAGTACAAAAAGACAATATGAAATCTATGAAAATAAGTGATGAACTATGTCACCCAAAATGTACAT
CCAAAGTACAAAAAGTTAAAGGTAAATCACGAAGTATTAAAAAATCTTGTTGTGCAGATTTTGAGTGTTT
GGAAAACAGTAAAAAAGATGTGGCATTCTGTTATTCATGCCAGTTGTTCTGCCAAAAATATTTTAGCTGT
GGAAGAGAGTCATTTGCAACCCACGGAACTTCTAATTGGAAAAAAACCCTGGAAAAATTCAGAAAGCATG
AAAAAAGTGAAATGCATTTGAAGTCATTGGAATTTTGGAGAGAATACCAATTTTGTGATGGAGCTGTCAG
TGACGATTTATCTATTCATTCGAAACAGATTGAGGGAAATAAAAAGTACCTAAAGCTTATAATTGAAAAT
ATTTTATTTCTTGGAAAGCAGTGTTTACCCTTAAGAGGAAACGACCAGTCAGTTTCATCTGTGAATAAAG
GCAATTTTTTAGAATTGTTAGAAATGAGAGCAAAAGATAAAGGAGAAGAAACATTTCGACTTATGAATTC
ACAAGTTGACTTCTATAACAGTACACAAATTCAAAGTGATATTATCGAAATAATAAAGACTGAAATGTTG
CAGGATATTGTGAATGAGATCAATGACTCCTCAGCATTTTCAATCATATGTGATGAGACAATCAATAGTG
CCATGAAAGAACAGCTTTCAATTTGTGTAAGATACCCACAAAAATCATCAAAGGCTATCTTAATTAAGGA
AAGATTCTTGGGTTTTGTTGATACTGAGGAGATGACTGGGACCCACTTACATAGGACTATCAAAACTTAT
CTGCAGCAAATTGGAGTTGATATGGATAAAATACATGGCCAGGCCTATGATAGCACCACTAATTTGAAGA
TAAAATTTAATAAAATAGCAGCAGAATTCAAGAAAGAAGAACCAAGAGCTTTATACATACATTGTTATGC
ACACTTTTTGGATTTATCAATAATTAGGTTTTGTAAAGAAGTAAAAGAACTCCGAAGTGCTCTAAAAACT
CTCAGTTCTTTGTTCAACACTATTTGTATGTCTGGGGAAATGTTGGCAAATTTTCGAAACATTTATAGGC
TAAGTCAAAACAAAACATGCAAGAAACATATATCACAATCATGTTGGACAGTCCATGATCGTACATTACT
ATCTGTGATTGACAGTCTTCCAGAGATTATTGAAACATTGGAAGTTATAGCAAGCCATTCTTCAAATACA
AGTTTCGCCGATGAATTGAGTCATTTGCTGACATTGGTTTCCAAATTTGAATTTGTCTTTTGTTTGAAAT
TCCTGTATCGAGTGCTGAGTGTTACAGGAATTCTTTCCAAAGAGCTTCAAAATAAAACCATAGACATTTT
TTCTTTGTCTTCAAAAATAGAAGCAATTTTGGAATGTTTATCATCTGAAAGAAATGACGTATACTTTAAA
ACAATCTGGGATGGAACAGAGGAAATATGTCAAAAAATAACCTGTAAAGGTTTTAAAGTTGAAAAACCTT
CTCTTCAGAAAAGAAGAAAAATTCAGAAATCAGTAGATCTTGGCAATTCAGATAATATGTTTTTTCCTAC
TTCAACAGAAGAACAATATAAAATTAATATCTATTACCAAGGATTAGATACTATATTACAAAATTTAAAG
TTATGTTTTTCGGAGTTTGATTATTGCAAAATAAAGCAAATTTCAGAACTGTTATTTAAATGGAATGAAC
CATTAAATGAAACAACAGCAAAACATGTTCAGGAATTTTATAAACTTGATGAGGACATTATCCCAGAACT
TAGATTTTATCGACATTATGCAAAGCTTAACTTTGTCATAGATGATAGTTGCATAAACTTCGTCAGTCTC
GGCTGTTTGTTTATTCAGCATGGTCTTCACAGTAATATTCCTTGTCTCTCAAAGCTATTATATATTGCTT
TGTCTTGGCCAATTACTTCAGCAAGTACTGAGAACTCATTTTCTACCCTGCCTCGTCTTAAGACATATTT
ATGTAATACCATGGGACAAGAGAAGCTTACTGGCCCAGCCCTAATGGCTGTTGAGCAGGAGTTGGTAAAT
AAACTAATGGAGCCTGAAAGACTCAATGAAATTGTGGAAAAGTTTATCAGTCAGATGAAAGAAATATAA

Translation (1142 aa):
MKEPLLGGECDKAVASQLGLLDEIKTEPDNAQEYCHRQQSRTQENELKINAVFSESASQLTAGIQLSLAS
SGVNKMLPSVSTTAIQVSCAGCKKILQKGQTAYQRKGSAQLFCSIPCITEYISSASSPVPSKRTCSNCSK
DILNPKDVISVQLEDTTSCKTFCSLSCLSSYEEKRKPFVTICTNSILTKCSMCQKTAIIQYEVKYQNVKH
NLCSNACLSKFHSANNFIMNCCENCGTYCYTSSSLSHILQMEGQSHYFNSSKSITAYKQKPAKPLISVPC
KPLKPSDEMIETTSDLGKTELFCSINCFSAYSKAKMESSSVSVVSVVHDTSTELLSPKKDTTPVISNIVS
LADTDVALPIMNTDVLQDTVSSVTATADVIVDLSKSSPSEPSNAVASSSTEQPSVSPSSSVFSQHAIGSS
TEVQKDNMKSMKISDELCHPKCTSKVQKVKGKSRSIKKSCCADFECLENSKKDVAFCYSCQLFCQKYFSC
GRESFATHGTSNWKKTLEKFRKHEKSEMHLKSLEFWREYQFCDGAVSDDLSIHSKQIEGNKKYLKLIIEN
ILFLGKQCLPLRGNDQSVSSVNKGNFLELLEMRAKDKGEETFRLMNSQVDFYNSTQIQSDIIEIIKTEML
QDIVNEINDSSAFSIICDETINSAMKEQLSICVRYPQKSSKAILIKERFLGFVDTEEMTGTHLHRTIKTY
LQQIGVDMDKIHGQAYDSTTNLKIKFNKIAAEFKKEEPRALYIHCYAHFLDLSIIRFCKEVKELRSALKT
LSSLFNTICMSGEMLANFRNIYRLSQNKTCKKHISQSCWTVHDRTLLSVIDSLPEIIETLEVIASHSSNT
SFADELSHLLTLVSKFEFVFCLKFLYRVLSVTGILSKELQNKTIDIFSLSSKIEAILECLSSERNDVYFK
TIWDGTEEICQKITCKGFKVEKPSLQKRRKIQKSVDLGNSDNMFFPTSTEEQYKINIYYQGLDTILQNLK
LCFSEFDYCKIKQISELLFKWNEPLNETTAKHVQEFYKLDEDIIPELRFYRHYAKLNFVIDDSCINFVSL
GCLFIQHGLHSNIPCLSKLLYIALSWPITSASTENSFSTLPRLKTYLCNTMGQEKLTGPALMAVEQELVN
KLMEPERLNEIVEKFISQMKEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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