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Report for CCDS419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
419.1 Public Homo sapiens 1 SNIP1 24 110 108 CCDS HistoryNCBI Gene:79753Re-query CCDS DB by CCDS ID:419.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 419.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296215.8 ENSP00000296215.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296215.8Link to Ensembl Protein Viewer:ENSP00000296215.5Re-query CCDS DB by Nucleotide ID:ENST00000296215Re-query CCDS DB by Protein ID:ENSP00000296215
Original member Current member NCBI NM_024700.4 NP_078976.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024700.4Link to Protein Sequence:NP_078976.2Re-query CCDS DB by Nucleotide ID:NM_024700Re-query CCDS DB by Protein ID:NP_078976Link to BLAST:NP_078976.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078976.2 396 Q8TAD8 396 100% 0 0

Chromosomal Locations for CCDS 419.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37537748 37538012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37540157 37540755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37552645 37552747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37554006 37554229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGAAGGCGGTGAAGAGCGAACGGGAGCGAGGGAGCCGGCGAAGACACCGGGACGGGGACGTGGTGCTGC
CGGCGGGGGTGGTGGTGAAGCAGGAGCGTCTCAGCCCAGAAGTCGCACCTCCCGCCCACCGCCGTCCGGA
CCACTCCGGTGGTAGCCCGTCTCCGCCGACCAGCGAGCCGGCCCGCTCGGGCCACCGCGGGAACCGAGCC
CGAGGAGTTAGCCGGTCCCCACCCAAAAAGAAAAACAAGGCCTCAGGGAGAAGAAGCAAGTCTCCTCGCA
GTAAGAGAAACCGAAGTCCTCACCACTCAACAGTCAAAGTGAAGCAGGAGCGTGAGGATCATCCCCGGAG
AGGACGGGAGGATCGGCAGCACAGGGAACCATCAGAACAGGAACACAGGAGAGCTAGGAACAGTGACCGG
GACAGACACCGGGGCCATTCCCACCAAAGGAGAACGTCTAACGAGAGGCCTGGGAGTGGGCAGGGTCAGG
GACGGGATCGAGACACTCAGAACCTGCAGGCTCAGGAAGAAGAGCGGGAGTTTTATAATGCCAGGCGACG
GGAGCATCGCCAGAGGAATGACGTTGGTGGTGGCGGCAGTGAGTCTCAGGAGTTGGTTCCTCGGCCTGGT
GGCAACAACAAAGAAAAAGAGGTGCCCGCTAAAGAAAAACCAAGCTTTGAACTTTCTGGGGCACTTCTTG
AGGACACCAACACTTTCCGGGGTGTAGTCATTAAATATAGTGAGCCCCCAGAAGCACGTATCCCCAAAAA
ACGGTGGCGTCTCTACCCATTTAAAAATGATGAGGTGCTTCCAGTCATGTACATACATCGACAGAGTGCG
TACCTACTGGGTCGACACCGCCGCATTGCAGACATTCCAATTGATCACCCGTCTTGTTCAAAGCAGCATG
CGGTCTTTCAATATCGGCTTGTGGAATATACCCGTGCTGATGGCACAGTTGGCCGAAGAGTGAAGCCCTA
CATCATTGACCTTGGCTCAGGCAATGGAACCTTCTTAAACAACAAACGTATTGAGCCACAGAGATACTAT
GAACTAAAAGAAAAGGATGTACTCAAATTTGGATTCAGTAGCAGAGAATACGTCTTGCTCCATGAGTCGT
CGGACACTTCTGAAATAGACAGGAAAGATGACGAGGATGAGGAGGAGGAGGAAGAAGTGTCTGACAGCTA
G

Translation (396 aa):
MKAVKSERERGSRRRHRDGDVVLPAGVVVKQERLSPEVAPPAHRRPDHSGGSPSPPTSEPARSGHRGNRA
RGVSRSPPKKKNKASGRRSKSPRSKRNRSPHHSTVKVKQEREDHPRRGREDRQHREPSEQEHRRARNSDR
DRHRGHSHQRRTSNERPGSGQGQGRDRDTQNLQAQEEEREFYNARRREHRQRNDVGGGGSESQELVPRPG
GNNKEKEVPAKEKPSFELSGALLEDTNTFRGVVIKYSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSA
YLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYY
ELKEKDVLKFGFSSREYVLLHESSDTSEIDRKDDEDEEEEEEVSDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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