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Report for CCDS3598.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3598.1 Public Homo sapiens 4 THAP9 24 110 108 CCDS HistoryNCBI Gene:79725Re-query CCDS DB by CCDS ID:3598.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3598.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302236.10 ENSP00000305533.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302236.10Link to Ensembl Protein Viewer:ENSP00000305533.5Re-query CCDS DB by Nucleotide ID:ENST00000302236Re-query CCDS DB by Protein ID:ENSP00000305533
Original member Current member NCBI NM_024672.6 NP_078948.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024672.6Link to Protein Sequence:NP_078948.3Re-query CCDS DB by Nucleotide ID:NM_024672Re-query CCDS DB by Protein ID:NP_078948Link to BLAST:NP_078948.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078948.3 903 Q9H5L6 903 100% 0 0

Chromosomal Locations for CCDS 3598.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 82900803 82900882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82904736 82904931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82906324 82906627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82907785 82907935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82916944 82918924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2712 nt):
ATGACCCGAAGTTGCTCCGCAGTGGGCTGCAGCACCCGTGACACCGTGCTCAGCCGGGAGCGCGGCCTCT
CCTTCCACCAATTTCCAACTGATACCATACAGCGCTCAAAATGGATCAGGGCTGTTAATCGTGTGGACCC
CAGAAGCAAAAAGATTTGGATTCCAGGACCAGGTGCTATACTGTGTTCCAAACATTTTCAAGAAAGTGAC
TTTGAGTCATATGGCATAAGAAGAAAGCTGAAAAAAGGAGCTGTGCCTTCTGTTTCTCTATACAAGATTC
CTCAAGGTGTACATCTTAAAGGTAAAGCAAGACAAAAAATCCTAAAACAACCTCTTCCAGACAATTCTCA
AGAAGTTGCTACTGAGGACCATAACTATAGTTTAAAGACACCTTTGACGATAGGTGCAGAGAAACTGGCT
GAGGTGCAACAAATGTTACAAGTGTCCAAAAAAAGACTTATCTCCGTAAAGAACTACAGGATGATCAAGA
AGAGAAAGGGTTTACGATTAATTGATGCACTTGTAGAAGAGAAACTACTTTCTGAAGAAACAGAGTGTCT
GCTACGAGCTCAATTTTCAGATTTTAAGTGGGAGTTATATAATTGGAGAGAAACAGATGAGTACTCCGCA
GAAATGAAACAATTTGCATGTACACTCTACTTGTGCAGTAGCAAAGTCTATGATTATGTAAGAAAGATTC
TTAAGCTGCCTCATTCTTCCATCCTCAGAACGTGGTTATCCAAATGCCAACCCAGTCCAGGTTTCAACAG
CAACATTTTTTCTTTTCTTCAACGAAGAGTAGAGAATGGAGATCAGCTCTATCAATACTGTTCATTGTTA
ATAAAAAGTATGCCTCTCAAGCAACAGCTTCAGTGGGATCCTAGCAGTCACAGTTTGCAGGGGTTTATGG
ACTTTGGTCTTGGAAAACTTGATGCTGATGAAACGCCACTTGCTTCAGAAACTGTTTTGTTAATGGCAGT
GGGTATTTTTGGCCATTGGAGAACACCTCTTGGTTATTTTTTTGTAAACAGAGCATCTGGATATTTGCAG
GCTCAGCTGCTTCGTCTGACTATTGGTAAACTGAGTGACATAGGAATCACAGTTCTGGCTGTTACATCTG
ATGCCACAGCACATAGTGTTCAGATGGCAAAAGCATTGGGGATACATATTGATGGAGACGACATGAAATG
TACATTTCAGCATCCTTCATCTTCTAGTCAACAGATTGCATACTTCTTTGACTCTTGCCACTTGCTAAGA
TTAATAAGAAATGCATTTCAGAATTTTCAAAGCATTCAGTTTATTAATGGTATAGCACATTGGCAGCACC
TCGTGGAGTTAGTAGCACTGGAGGAACAGGAATTATCAAATATGGAAAGAATACCAAGTACACTTGCAAA
TTTGAAAAATCATGTACTGAAAGTGAATAGTGCCACCCAACTCTTTAGTGAGAGTGTAGCCAGTGCATTA
GAATATTTGTTATCCTTAGACCTGCCACCTTTTCAAAACTGTATTGGTACCATCCATTTTTTACGTTTAA
TTAACAATCTGTTTGACATCTTTAATAGTAGGAACTGTTATGGAAAGGGACTTAAAGGGCCTCTGTTGCC
TGAAACTTACAGTAAAATAAACCACGTGTTAATTGAAGCCAAGACTATTTTTGTTACATTATCTGACACT
AGCAATAATCAAATAATTAAAGGTAAGCAAAAACTAGGATTCCTGGGATTTTTGCTCAATGCTGAGAGCT
TAAAATGGCTCTACCAAAATTATGTTTTCCCAAAGGTCATGCCTTTTCCTTATCTTCTGACTTACAAATT
CAGTCATGATCATCTGGAATTATTTCTAAAGATGCTTAGGCAGGTATTAGTAACAAGTTCTAGCCCTACC
TGCATGGCATTCCAGAAAGCTTACTATAATTTGGAGACCAGATACAAATTTCAAGATGAAGTTTTTCTAA
GCAAAGTAAGCATCTTTGACATTTCAATTGCTCGAAGGAAAGACTTGGCGCTTTGGACAGTTCAACGTCA
GTATGGTGTCAGCGTTACAAAGACTGTCTTTCACGAAGAGGGTATTTGTCAAGACTGGTCTCATTGTTCA
CTAAGTGAGGCATTACTAGACCTGTCAGATCATAGGCGAAATCTCATCTGTTATGCTGGTTATGTTGCAA
ACAAGTTATCAGCTCTTTTAACTTGTGAGGACTGCATCACTGCACTGTATGCATCGGATCTCAAAGCCTC
TAAAATTGGGTCACTATTATTTGTTAAAAAGAAGAATGGTTTGCATTTTCCTTCAGAAAGTCTGTGTCGG
GTCATAAATATTTGTGAGCGAGTTGTAAGAACCCATTCAAGAATGGCAATTTTTGAACTAGTTTCTAAAC
AAAGGGAATTGTATCTTCAACAGAAAATATTATGTGAGCTTTCTGGGCATATTAATCTTTTTGTAGATGT
GAATAAGCATCTCTTTGATGGAGAAGTGTGTGCCATCAATCACTTTGTCAAGTTGCTAAAGGATATAATA
ATCTGTTTCTTAAATATCAGAGCTAAAAATGTTGCACAGAATCCTTTAAAACATCATTCAGAGAGAACTG
ATATGAAAACTTTATCAAGGAAACACTGGTCATCTGTACAGGATTATAAATGTTCAAGTTTTGCTAATAC
CAGTAGTAAATTCAGGCATTTGCTAAGTAACGATGGATATCCATTCAAATGA

Translation (903 aa):
MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSKWIRAVNRVDPRSKKIWIPGPGAILCSKHFQESD
FESYGIRRKLKKGAVPSVSLYKIPQGVHLKGKARQKILKQPLPDNSQEVATEDHNYSLKTPLTIGAEKLA
EVQQMLQVSKKRLISVKNYRMIKKRKGLRLIDALVEEKLLSEETECLLRAQFSDFKWELYNWRETDEYSA
EMKQFACTLYLCSSKVYDYVRKILKLPHSSILRTWLSKCQPSPGFNSNIFSFLQRRVENGDQLYQYCSLL
IKSMPLKQQLQWDPSSHSLQGFMDFGLGKLDADETPLASETVLLMAVGIFGHWRTPLGYFFVNRASGYLQ
AQLLRLTIGKLSDIGITVLAVTSDATAHSVQMAKALGIHIDGDDMKCTFQHPSSSSQQIAYFFDSCHLLR
LIRNAFQNFQSIQFINGIAHWQHLVELVALEEQELSNMERIPSTLANLKNHVLKVNSATQLFSESVASAL
EYLLSLDLPPFQNCIGTIHFLRLINNLFDIFNSRNCYGKGLKGPLLPETYSKINHVLIEAKTIFVTLSDT
SNNQIIKGKQKLGFLGFLLNAESLKWLYQNYVFPKVMPFPYLLTYKFSHDHLELFLKMLRQVLVTSSSPT
CMAFQKAYYNLETRYKFQDEVFLSKVSIFDISIARRKDLALWTVQRQYGVSVTKTVFHEEGICQDWSHCS
LSEALLDLSDHRRNLICYAGYVANKLSALLTCEDCITALYASDLKASKIGSLLFVKKKNGLHFPSESLCR
VINICERVVRTHSRMAIFELVSKQRELYLQQKILCELSGHINLFVDVNKHLFDGEVCAINHFVKLLKDII
ICFLNIRAKNVAQNPLKHHSERTDMKTLSRKHWSSVQDYKCSSFANTSSKFRHLLSNDGYPFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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