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Report for CCDS9239.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9239.1 Public Homo sapiens 12 VPS37B 24 110 108 CCDS HistoryNCBI Gene:79720Re-query CCDS DB by CCDS ID:9239.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9239.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000267202.7 ENSP00000267202.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000267202.7Link to Ensembl Protein Viewer:ENSP00000267202.2Re-query CCDS DB by Nucleotide ID:ENST00000267202Re-query CCDS DB by Protein ID:ENSP00000267202
Original member Current member NCBI NM_024667.3 NP_078943.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024667.3Link to Protein Sequence:NP_078943.1Re-query CCDS DB by Nucleotide ID:NM_024667Re-query CCDS DB by Protein ID:NP_078943Link to BLAST:NP_078943.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078943.1 285 Q9H9H4 285 100% 0 0

Chromosomal Locations for CCDS 9239.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 122867116 122867607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122868480 122868562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122870890 122871061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122895952 122896062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGGCGGGCGCCGGGAGCGAAGCCCGGTTCGCCGGGCTGTCGCTGGTGCAGCTCAACGAGCTGCTGGAGG
ACGAGGGCCAGCTGACGGAGATGGTGCAGAAGATGGAGGAGACACAGAATGTTCAGCTTAACAAAGAAAT
GACACTTGCCAGCAACCGGAGCCTGGCAGAAGGAAACCTTTTGTACCAGCCCCAGCTGGACACGTTGAAA
GCACGCTTGACCCAGAAATACCAGGAACTCCAGGTTCTCTTTGAAGCCTATCAGATAAAGAAGACCAAAT
TAGACAGACAGTCTAGCAGTGCTTCCTTGGAGACCCTGTTAGCACTTCTTCAGGCAGAAGGGGCCAAGAT
TGAGGAAGACACTGAGAACATGGCAGAGAAGTTTCTGGATGGAGAACTTCCTCTGGATTCCTTCATTGAT
GTCTATCAGAGCAAACGGAAACTGGCCCACATGCGACGGGTGAAAATCGAGAAGCTCCAGGAGATGGTCC
TAAAGGGGCAGAGACTCCCACAGGCCCTGGCCCCGCTGCCCCCCAGGCTGCCCGAACTGGCACCTACCGC
CCCCCTTCCCTACCCTGCCCCAGAGGCCAGTGGGCCTCCTGCCGTTGCACCTCGGCGCATCCCCCCCCCA
CCACCCCCGGTGCCTGCGGGACGCTTAGCCACCCCGTTTACTGCGGCCATGAGTTCGGGACAGGCCGTGC
CGTACCCAGGATTACAGTGCCCGCCCCTGCCCCCCCGCGTGGGCCTCCCCACTCAGCAAGGATTCTCTTC
GCAGTTCGTGTCCCCATATCCGCCACCTCTCCCTCAGAGACCCCCGCCCCGGCTCCCTCCACACCAGCCG
GGTTTCATCCTCCAGTGA

Translation (285 aa):
MAGAGSEARFAGLSLVQLNELLEDEGQLTEMVQKMEETQNVQLNKEMTLASNRSLAEGNLLYQPQLDTLK
ARLTQKYQELQVLFEAYQIKKTKLDRQSSSASLETLLALLQAEGAKIEEDTENMAEKFLDGELPLDSFID
VYQSKRKLAHMRRVKIEKLQEMVLKGQRLPQALAPLPPRLPELAPTAPLPYPAPEASGPPAVAPRRIPPP
PPPVPAGRLATPFTAAMSSGQAVPYPGLQCPPLPPRVGLPTQQGFSSQFVSPYPPPLPQRPPPRLPPHQP
GFILQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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