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Report for CCDS12351.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12351.1 Public Homo sapiens 19 OCEL1 24 110 108 CCDS HistoryNCBI Gene:79629Re-query CCDS DB by CCDS ID:12351.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12351.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000215061.9 ENSP00000215061.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000215061.9Link to Ensembl Protein Viewer:ENSP00000215061.3Re-query CCDS DB by Nucleotide ID:ENST00000215061Re-query CCDS DB by Protein ID:ENSP00000215061
Original member Current member NCBI NM_024578.3 NP_078854.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024578.3Link to Protein Sequence:NP_078854.1Re-query CCDS DB by Nucleotide ID:NM_024578Re-query CCDS DB by Protein ID:NP_078854Link to BLAST:NP_078854.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078854.1 264 Q9H607 264 100% 0 0

Chromosomal Locations for CCDS 12351.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 17226248 17226316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17226693 17226869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17226994 17227199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17227840 17228005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17228256 17228309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17228803 17228925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGCACAACCCGGACGGAAGTGCCTCTCCGACAGCAGATCCAGGCTCGGAGCTCCAGACGCTGGGACAGG
CCGCCCGCAGACCACCCCCGCCGCGCGCGGGACACGACGCCCCCCGCAGGACCCGCCCATCAGCCCGGAA
ACCCCTGAGCTGCTTCTCCCGGAGGCCGATGCCCACCCGGGAGCCCCCAAAGACTCGCGGCTCCCGGGGG
CACCTGCATACTCACCCGCCTGGGCCTGGGCCCCCGCTGCAGGGACTGGCGCCCCGAGGCCTCAAAACCA
GCGCCCCCCGCCCTCCGTGCCAGCCCCAGCCGGGACCCCACAAGGCAAAGACCAAGAAGATTGTGTTTGA
GGATGAGTTGCTCTCCCAGGCCCTCCTGGGCGCCAAGAAGCCTATTGGAGCCATCCCTAAGGGGCATAAG
CCTAGGCCCCACCCAGTGCCCGACTATGAGCTTAAGTACCCGCCAGTGAGCAGTGAGAGGGAACGGAGCC
GCTATGTCGCAGTGTTCCAGGACCAGTACGGAGAGTTCTTGGAGCTCCAGCACGAGGTGGGGTGTGCACA
GGCAAAGCTCAGGCAGCTGGAGGCCCTGCTGAGCTCCCTGCCCCCACCCCAAAGCCAGAAGGAGGCCCAA
GTTGCAGCCCGGGTTTGGAGGGAGTTTGAGATGAAGCGAATGGATCCTGGCTTCCTGGACAAGCAGGCTC
GCTGCCACTACCTGAAGGGTAAACTGAGGCATCTCAAGACTCAGATCCAGAAATTCGATGACCAAGGAGA
CAGCGAGGGCTCCGTGTACTTCTAA

Translation (264 aa):
MHNPDGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTRGSRG
HLHTHPPGPGPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTKKIVFEDELLSQALLGAKKPIGAIPKGHK
PRPHPVPDYELKYPPVSSERERSRYVAVFQDQYGEFLELQHEVGCAQAKLRQLEALLSSLPPPQSQKEAQ
VAARVWREFEMKRMDPGFLDKQARCHYLKGKLRHLKTQIQKFDDQGDSEGSVYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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