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Report for CCDS24728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24728.1 Public Mus musculus 11 Sh3bp5l 23 108 98 CCDS HistoryNCBI Gene:79566Re-query CCDS DB by CCDS ID:24728.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24728.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073128.6 ENSMUSP00000072872.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073128.6Link to Ensembl Protein Viewer:ENSMUSP00000072872.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000073128Re-query CCDS DB by Protein ID:ENSMUSP00000072872
Original member Current member EBI ENSMUST00000116376.8 ENSMUSP00000112077.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116376.8Link to Ensembl Protein Viewer:ENSMUSP00000112077.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116376Re-query CCDS DB by Protein ID:ENSMUSP00000112077
Original member Current member NCBI NM_001161338.2 NP_001154810.1 Accepted alive Link to Nucleotide Sequence:NM_001161338.2Link to Protein Sequence:NP_001154810.1Re-query CCDS DB by Nucleotide ID:NM_001161338Re-query CCDS DB by Protein ID:NP_001154810Link to BLAST:NP_001154810.1
Original member Current member NCBI NM_001308168.1 NP_001295097.1 Accepted alive Link to Nucleotide Sequence:NM_001308168.1Link to Protein Sequence:NP_001295097.1Re-query CCDS DB by Nucleotide ID:NM_001308168Re-query CCDS DB by Protein ID:NP_001295097Link to BLAST:NP_001295097.1
Original member Current member NCBI NM_024480.5 NP_077800.3 Accepted alive Link to Nucleotide Sequence:NM_024480.5Link to Protein Sequence:NP_077800.3Re-query CCDS DB by Nucleotide ID:NM_024480Re-query CCDS DB by Protein ID:NP_077800Link to BLAST:NP_077800.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154810.1 392 Q99LH9 392 100% 0 0
NP_001295097.1 392 Q99LH9 392 100% 0 0
NP_077800.3 392 Q99LH9 392 100% 0 0

Chromosomal Locations for CCDS 24728.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58331681 58331863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58337737 58337799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58337949 58338077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58341286 58341447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58345312 58345485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58345930 58346397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGGCTGATCTCAAAAAGGCTGCAGGGGGCCGGGAGACTCCGCAGGGGGAACTTCGGTCAGAGGTGGTAG
AGGATGAGGGCCCTAGGAGCCCGGTCGCAGAGGAGCCTGGAGGAAGTGGAAGCAACAGCAGTGAGACCAA
ATTGTCCCCTAGAGAGGAGGAGGAACTGGATCCTAGGATACAGGAGGAGCTGGAACATCTGAACCAGGCC
AGTGAGGAAATCAACCAGGTGGAGCTACAGCTAGACGAGGCCAGGACCACCTATCGGAGGATCCTGCAGG
AGTCAGCCAGGAAGCTTAACACACAGGGCTCTCACTTGGGGAGCTGTATTGAGAAGGCCCGGCCCTACTA
TGAGGCTCGACGACTGGCTAAGGAGGCCCAGCAGGAGACACAGAAGGCGGCCTTGCGGTATGAGCGGGCT
GTGAGCATGCACAATGCCGCCCGGGAGATGGTCTTTGTGGCTGAGCAGGGGGTCATGGCTGACAAAAATC
GACTGGACCCTACCTGGCAGGAGATGCTCAACCATGCTACCTGTAAGGTGAACGAGGCAGAGGAAGAGCG
GCTTCGAGGTGAACGGGAGCATCAGCGTGTGACGAGGCTGTGCCAGCAGGCTGAAGCTCGGGTCCAGGCC
CTGCAGAAGACCCTCCGGCGGGCCATTGGCAAGAGCCGCCCCTACTTTGAGCTCAAGGCCCAGTTCAGCC
AAATCCTGGAGGAGCACAAGGCCAAGGTGACAGAACTGGAGCAGCAGGTGGCGCAGGCCAAGACCCGCTA
CTCGGTGGCCCTGCGTAATCTGGAGCAGATCAGTGAGCAGATTCATGCCAGGCGCCGGGGTTTGCCCCCG
CACCCCCTGGGCCCACGGCGATCCTCCCCTGTTGGGGCTGAAGCTGGACCTGAGGGCATTGAGGATGGGG
ACAGTGGGATTGAAGGGGCAGAGGGCGGGGGCCTAGAGGAGGGCAGCAGCCTTGGGCCTGGCCCAGGCCC
AGATACGGACACGCTAAGCTTATTGAGTCTGCGCACTGTGGCCTCTGACCTGCAGAAGTGTGACTCAGTG
GAGCACCTGCGTGGCCTCTCGGACCATGCCAGTCTAGATGGCCAAGAGCTGGGAGCCCAGAGCCGGGGAC
GCCGGGGAAGTGACATCGGAGTTCGAGGGGGTCGGCACCAGCGCAGTGTCAGCCTGTAG

Translation (392 aa):
MADLKKAAGGRETPQGELRSEVVEDEGPRSPVAEEPGGSGSNSSETKLSPREEEELDPRIQEELEHLNQA
SEEINQVELQLDEARTTYRRILQESARKLNTQGSHLGSCIEKARPYYEARRLAKEAQQETQKAALRYERA
VSMHNAAREMVFVAEQGVMADKNRLDPTWQEMLNHATCKVNEAEEERLRGEREHQRVTRLCQQAEARVQA
LQKTLRRAIGKSRPYFELKAQFSQILEEHKAKVTELEQQVAQAKTRYSVALRNLEQISEQIHARRRGLPP
HPLGPRRSSPVGAEAGPEGIEDGDSGIEGAEGGGLEEGSSLGPGPGPDTDTLSLLSLRTVASDLQKCDSV
EHLRGLSDHASLDGQELGAQSRGRRGSDIGVRGGRHQRSVSL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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