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Report for CCDS14448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14448.1 Public Homo sapiens X HMGN5 24 110 108 CCDS HistoryNCBI Gene:79366Re-query CCDS DB by CCDS ID:14448.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14448.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358130.7 ENSP00000350848.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358130.7Link to Ensembl Protein Viewer:ENSP00000350848.2Re-query CCDS DB by Nucleotide ID:ENST00000358130Re-query CCDS DB by Protein ID:ENSP00000350848
Original member Current member NCBI NM_030763.3 NP_110390.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030763.3Link to Protein Sequence:NP_110390.1Re-query CCDS DB by Nucleotide ID:NM_030763Re-query CCDS DB by Protein ID:NP_110390Link to BLAST:NP_110390.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110390.1 282 P82970 282 100% 0 0

Chromosomal Locations for CCDS 14448.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 81114649 81115230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 81116204 81116341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 81118432 81118485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 81118730 81118759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 81119788 81119817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 81121535 81121549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGCCCAAAAGAAAGGCTGCAGGTCAAGGTGATATGAGGCAGGAGCCAAAGAGAAGATCTGCCAGGTTGT
CTGCTATGCTTGTGCCAGTTACACCAGAGGTGAAGCCTAAAAGAACATCAAGTTCAAGGAAAATGAAGAC
AAAAAGTGATATGATGGAAGAAAACATAGATACAAGTGCCCAAGCAGTTGCTGAAACCAAGCAAGAAGCA
GTTGTTGAAGAAGACTACAATGAAAATGCTAAAAATGGAGAAGCCAAAATTACAGAGGCACCAGCTTCTG
AAAAAGAAATTGTGGAAGTAAAAGAAGAAAATATTGAAGATGCCACAGAAAAGGGAGGAGAAAAGAAAGA
AGCAGTGGCAGCAGAAGTAAAAAATGAAGAAGAAGATCAGAAAGAAGATGAAGAAGATCAAAACGAAGAG
AAAGGGGAAGCTGGAAAAGAAGACAAAGATGAAAAAGGGGAAGAAGATGGAAAAGAGGATAAAAATGGAA
ATGAGAAAGGAGAAGATGCAAAAGAGAAAGAAGATGGAAAAAAAGGTGAAGACGGAAAAGGAAATGGAGA
AGATGGAAAAGAGAAAGGAGAAGATGAAAAAGAGGAAGAAGACAGAAAAGAAACAGGAGATGGAAAAGAG
AATGAAGATGGAAAAGAGAAGGGAGATAAAAAAGAGGGGAAAGATGTAAAAGTCAAAGAAGATGAAAAAG
AGAGAGAAGATGGAAAAGAAGATGAAGGTGGAAATGAGGAAGAAGCTGGAAAAGAGAAAGAAGATTTAAA
AGAAGAGGAAGAAGGAAAAGAGGAAGATGAGATCAAAGAAGATGATGGAAAAAAAGAGGAGCCACAGAGT
ATTGTTTAA

Translation (282 aa):
MPKRKAAGQGDMRQEPKRRSARLSAMLVPVTPEVKPKRTSSSRKMKTKSDMMEENIDTSAQAVAETKQEA
VVEEDYNENAKNGEAKITEAPASEKEIVEVKEENIEDATEKGGEKKEAVAAEVKNEEEDQKEDEEDQNEE
KGEAGKEDKDEKGEEDGKEDKNGNEKGEDAKEKEDGKKGEDGKGNGEDGKEKGEDEKEEEDRKETGDGKE
NEDGKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEEAGKEKEDLKEEEEGKEEDEIKEDDGKKEEPQS
IV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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