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Report for CCDS27462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27462.1 Public Mus musculus 15 Utp23 23 108 98 CCDS HistoryNCBI Gene:78581Re-query CCDS DB by CCDS ID:27462.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000137116.2 ENSMUSP00000119261.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137116.2Link to Ensembl Protein Viewer:ENSMUSP00000119261.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000137116Re-query CCDS DB by Protein ID:ENSMUSP00000119261
Original member Current member NCBI NM_030132.5 NP_084408.1 Accepted alive Link to Nucleotide Sequence:NM_030132.5Link to Protein Sequence:NP_084408.1Re-query CCDS DB by Nucleotide ID:NM_030132Re-query CCDS DB by Protein ID:NP_084408Link to BLAST:NP_084408.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084408.1 249 Q9CX11 249 100% 0 0

Chromosomal Locations for CCDS 27462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 51877523 51877710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51881016 51881190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51882151 51882537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGAAGATCACCAGGCAGAAACACGCCAAGAAGCATCTCGGCTTTTTCCGCAACAATTTCGGAGTCCGCG
AGCCCTACCAGATCCTTCTGGATGGCACTTTCTGCCAGGCGGCGCTGCGGGGTCGCATCCAGCTGCGGGA
CCAGCTGCCCCGCTACCTTATGGGAGAGACCCAGCTGTGCACCACGAGATGTGTGTTAAAGGAGTTAGAA
ACACTGGGAAAGGAATTATATGGAGCAAAACTGATTGCACAGAAATGCCAGGTTCGAAACTGTCCTCATT
TCAAGAGCCCAGTGAGTGGGTCTGAATGTCTCCTGTCCATGGTGGATGAGGGGAACCCTCATCATTATTT
TGTGGCCACACAGGATCAGAACTTATCTGTGAAAGTCAAGAGGACTCCTGGAATTCCTCTCATGTTCATT
ATTCAGAACACTATAGTGTTGGACAAGCCTTCTCCCAGAACAGTGGCCTTTGTGAAGGCGGTCGAGGCGG
GTCAGCTGGTCTCAGTGCACGAGAAACAGAGTATCAAGCAACTGAAGGAGGAGCAAGGCCTGGTGCGGAA
CCCGGACCTGAGGAGGAGGAGGAGGAAAAAGAAGAAGGTGGGCGGCCCCAATCCTCTCAGCTGCCTGAAG
AAAAAGAAGAAAGCACAGGATACAAAGTCCCCTGCTTCCGAAAAGAAAAGGAAAAGGAAACGGATTCGGA
ACAGATCCACCCTGAAAGTGTCTTCTGAGCAGCAGGGTGCAGAAGGCTGA

Translation (249 aa):
MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQLRDQLPRYLMGETQLCTTRCVLKELE
TLGKELYGAKLIAQKCQVRNCPHFKSPVSGSECLLSMVDEGNPHHYFVATQDQNLSVKVKRTPGIPLMFI
IQNTIVLDKPSPRTVAFVKAVEAGQLVSVHEKQSIKQLKEEQGLVRNPDLRRRRRKKKKVGGPNPLSCLK
KKKKAQDTKSPASEKKRKRKRIRNRSTLKVSSEQQGAEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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