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Report for CCDS18660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18660.1 Public Mus musculus 4 AU040320 23 108 98 CCDS HistoryNCBI Gene:100317Re-query CCDS DB by CCDS ID:18660.1Re-query CCDS DB by GeneID:100317See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18660.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102607.9 ENSMUSP00000099667.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102607.9Link to Ensembl Protein Viewer:ENSMUSP00000099667.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102607Re-query CCDS DB by Protein ID:ENSMUSP00000099667
Original member Current member EBI ENSMUST00000102608.9 ENSMUSP00000099668.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102608.9Link to Ensembl Protein Viewer:ENSMUSP00000099668.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102608Re-query CCDS DB by Protein ID:ENSMUSP00000099668
Original member Current member NCBI NM_001035525.1 NP_001030602.1 Accepted alive Link to Nucleotide Sequence:NM_001035525.1Link to Protein Sequence:NP_001030602.1Re-query CCDS DB by Nucleotide ID:NM_001035525Re-query CCDS DB by Protein ID:NP_001030602Link to BLAST:NP_001030602.1
Original member Current member NCBI NM_001035526.1 NP_001030603.1 Accepted alive Link to Nucleotide Sequence:NM_001035526.1Link to Protein Sequence:NP_001030603.1Re-query CCDS DB by Nucleotide ID:NM_001035526Re-query CCDS DB by Protein ID:NP_001030603Link to BLAST:NP_001030603.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001030602.1 1085 Q8K135-2 1085 99.9078% 0 1
NP_001030603.1 1085 Q8K135-2 1085 99.9078% 0 1

Chromosomal Locations for CCDS 18660.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 126756927 126757068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126791775 126792295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126814256 126814502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126816373 126816474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126823644 126823741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126828801 126828888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126830330 126830422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126832090 126832222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126835471 126835699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126836635 126836758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126837287 126837419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126839599 126839747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126840646 126840797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126841106 126841244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126842476 126842635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126846358 126846500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126847141 126847263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126847777 126847867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126848811 126848902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126853166 126853277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126854391 126854461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126868693 126868759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126869343 126869391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3258 nt):
ATGGAGAAGAGACTGGGAGTCAAGCCAAGTCCCGCTTCCTGGGTTTTGCCAGGATATTGTTGGCAGACAT
CAGTGAAGCTGCCGAGAAGCCTGTACCTGCTTTACAGTTTCTTCTGCTTCAGCGTTCTGTGGTTGTCAAC
AGATGCTGATGAGAGCAGATGCCAACAGGGGAAGACACTTTATGGAGCTGGCTTGAGAACTGAGGGAGAA
AATCACCTCCGGCTTCTTGCAGGAAGCCTGCCTTTCCACGCCTGTCGGGCTGCCTGCTGCCGGGACTCTG
CCTGCCACGCTCTATGGTGGCTGGAAGGGATGTGCTTTCAGGCTGACTGCAGTAAGCCCCAGAGCTGCCA
GCCTTTTAGGACAGACTCTTCCAATTCCATGCTGATCATTTTTCAAAAATCCCAAACTACAGATGATTTG
GGCCTTCTGCCTGAAGATGATGAACCACATCTTCTGAGGCTAGGCTGGGGCAGGACATCGTGGAGGAGGC
AGAGCCTTCTTGGGGCTCCCCTCACCCTTTCTGTACCCTCTAGTCACCACCAGAGCTTACTCAGGGATCG
GCAGAAGAGAGATCTCAGTGTGGTACCTACACATGGAGCGATGCAGCATTCTAAAGTGAATCACTCGGAG
GAAGCAGGTGCTCTGAGTCCCACCTCTGCAGAGGTCCGCAAAACCATTACAGTTGCCGGTTCCTTCACCA
GTAACCACACTACACAGACTCCTGAGTGGCCCAAGAATGTGTCCATCCATCCTGAACCATCCGAGCACTC
CAGTCCTGTATCTGGTACTCCGCAAGTAAAAAGCACTGAGCACAGTCCAACTGATGCCCCTCTGCCAGTG
GCCCCCTCCTACAGCTATGCCACCCCCACGCCCCAGGCCTCTTCTCAGAGCACCTCAGCACCACACCCAG
TTGTAAAGGAGCTGGTGGTGTCTGCTGGGAAGAGCGTCCAGATCACCCTGCCTAAGAATGAAGTTCAGTT
AAATGCCTTCGTCCTTCCAGAAGCAGAGCCAGGAGAAACCTACACCTACGACTGGCAGCTGATCACTCAT
CCTACAGACTACAGTGGAGAGGTGGAGAGGAAACATTCCCAGAGCCTCCAACTGTCCAAGCTGACTCCAG
GCCTGTACGAATTCAAGGTGACTGTGGATGGCCAGAATGCCCATGGGGAAGGCTACGTGAATGTGACAGT
GAAACCAGAGCCCCGTAAGAACCGGCCTCCCGTTGCTGTGGTGTCACCTCAGTTCCAGGAGATCTCGCTG
CCAACCACTTCTACCATCATTGATGGCAGCCAGAGCACGGATGACGATAAAATTGTCCAGTACCACTGGG
AAGAGCTTAAGGGGCCCCTGAGAGAAGAGAAGATCTCTGAAGACACAGCCATACTAAAACTTAGTAAGCT
CGTCCCGGGGAACTACACCTTCAGCTTAACTGTTGTCGACTCTGACGGGGCTACCAACTCCACCACTGCA
AGCCTGACTGTGAACAAAGCTGTGGACTACCCTCCCGTGGCCAATGCAGGCCCCAACCAAGTGATCACCC
TGCCTCAGAACTCCATCACCCTCTTTGGAAACCAGAGCACGGATGACCACGGCATCACCAGCTATGAGTG
GTCGCTCAGCCCGAGCAGCAAAGGGAAGGTGGTGGAGATGCAGGGAGTTAGAACGCCAGCCCTGCAGCTG
TCCGCAATGCAAGAAGGAGACTATACCTACCAGCTCACAGTGACTGACACCGCAGGACAACAGGCCACCG
CCCAAGTGACTGTGATTGTGCAGCCTGAGAACAACAAGCCTCCTCAGGCAGATGCAGGCCCAGACAAAGA
GCTGACCCTGCCCGTGGACAGCACAACCCTGGACGGCAGCAAGAGCACAGATGACCAGAGAGTCGTCTCT
TACCTTTGGGAGCAGAGTCGGGGACCTGACGGGGTGCAGCTGGAGAATGCCAACAGCAGTGTCGCCACTG
TGACTGGGCTGCAAGTCGGGACTTATGTATTCACCTTGACTGTCAAAGATGAGAGGAACCTACAGAGCCA
GAGCTCCGTTAATGTCATTGTCAAAGAAGAAATAAACAAACCGCCAGTAGCCAAGATCGCTGGGAACGTG
GTGGTGACCTTGCCCACGAGCACAGCTGAGCTGGATGGCTCGAGGTCCTCAGATGACAAGGGGATAGTCA
GCTACCTGTGGACTCGAGATGAGACGAGCCCAGCCGCAGGGGAGGTGCTGAATCACTCTGACCACCACCC
TGTCCTCTTCCTCTCCAACCTGGTGGAGGGGACCTACACGTTTCACCTGAAAGTGACAGATGCAAAGGGC
GAGAGCGACACAGACCGGACGACAGTGGAAGTGAAGCCTGACCCCAGGAAAAGCAACCTAGTGGAGATCA
TCTTGGATGTGAACGTCAGTCAGCTGACTGAGAGGCTGAAGGGGATGCTCATCCGCCAGATTGGGGTCCT
CCTGGGGGTGCTGGATTCCGACATCATTGTGCAAAAGATTCAGCCGTACACGGAGCAGAGCACCAAGATG
TTGTTTTTTGTTCAGAACGACCCTCCCCACCAGCTCTTCAAAGGCCATGAGGTGGCAGCCATGCTCAAGA
GCGAGCTGCAGAAGCAGAAGGCTGACTTCCTCATCTTCAGAGCCCTGGAAATCAGCACAGTCACATGTCA
GCTGAACTGTTCTGACCATGGCCACTGTGACTCATTCACCAAGCGCTGTGTCTGTGACCCGTTTTGGATG
GAGAATTTCATCAAGGTGCAGCTGAGGGATGGAGACAGCAACTGTGAATGGAGCGTGCTCTACGTCATCA
TTGCCTCCTTTGTCATTGTTGTTGCCTTGGGGATCCTGTCATGGACTACAATCTGCTGCTGCAAGAGGCA
AAAAGGAAAACCCAAGAGGAAAAGCAGATACAAGATCCTGGATGCCACAGATCAGGAGAGCCTGGAGCTG
AAACCAACCTCCCGAGCAGGCAGCAAACAGAAAGGCCCCACGCTGAGCAGCAGCCTGATGCATTCTGAAT
CGGAGCTGGACAGCGACGATGCCATCTTCACATGGCCAGACCGGGAGAAGGGCAAACTACTGGCCCTCCA
CTGGTGTAGATCCCAAAGCCTGCAGCATATTGGCTGGTGGTGTAGGGCCCCAGTCTGCCATGAAACCTCA
TCTACCAACAGCACACCTGGCTCTGACTCCGGCTTCTGTAAAGGCGGGAAGAACCTCAGCTCAGACTACA
GAACCAGGACGAAGTCAGCTTTGGTCCATGGGAAATGA

Translation (1085 aa):
MEKRLGVKPSPASWVLPGYCWQTSVKLPRSLYLLYSFFCFSVLWLSTDADESRCQQGKTLYGAGLRTEGE
NHLRLLAGSLPFHACRAACCRDSACHALWWLEGMCFQADCSKPQSCQPFRTDSSNSMLIIFQKSQTTDDL
GLLPEDDEPHLLRLGWGRTSWRRQSLLGAPLTLSVPSSHHQSLLRDRQKRDLSVVPTHGAMQHSKVNHSE
EAGALSPTSAEVRKTITVAGSFTSNHTTQTPEWPKNVSIHPEPSEHSSPVSGTPQVKSTEHSPTDAPLPV
APSYSYATPTPQASSQSTSAPHPVVKELVVSAGKSVQITLPKNEVQLNAFVLPEAEPGETYTYDWQLITH
PTDYSGEVERKHSQSLQLSKLTPGLYEFKVTVDGQNAHGEGYVNVTVKPEPRKNRPPVAVVSPQFQEISL
PTTSTIIDGSQSTDDDKIVQYHWEELKGPLREEKISEDTAILKLSKLVPGNYTFSLTVVDSDGATNSTTA
SLTVNKAVDYPPVANAGPNQVITLPQNSITLFGNQSTDDHGITSYEWSLSPSSKGKVVEMQGVRTPALQL
SAMQEGDYTYQLTVTDTAGQQATAQVTVIVQPENNKPPQADAGPDKELTLPVDSTTLDGSKSTDDQRVVS
YLWEQSRGPDGVQLENANSSVATVTGLQVGTYVFTLTVKDERNLQSQSSVNVIVKEEINKPPVAKIAGNV
VVTLPTSTAELDGSRSSDDKGIVSYLWTRDETSPAAGEVLNHSDHHPVLFLSNLVEGTYTFHLKVTDAKG
ESDTDRTTVEVKPDPRKSNLVEIILDVNVSQLTERLKGMLIRQIGVLLGVLDSDIIVQKIQPYTEQSTKM
LFFVQNDPPHQLFKGHEVAAMLKSELQKQKADFLIFRALEISTVTCQLNCSDHGHCDSFTKRCVCDPFWM
ENFIKVQLRDGDSNCEWSVLYVIIASFVIVVALGILSWTTICCCKRQKGKPKRKSRYKILDATDQESLEL
KPTSRAGSKQKGPTLSSSLMHSESELDSDDAIFTWPDREKGKLLALHWCRSQSLQHIGWWCRAPVCHETS
STNSTPGSDSGFCKGGKNLSSDYRTRTKSALVHGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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