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Report for CCDS26261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26261.1 Public Mus musculus 13 Sfrp4 23 108 98 CCDS HistoryNCBI Gene:20379Re-query CCDS DB by CCDS ID:26261.1Re-query CCDS DB by GeneID:20379See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26261.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002883.6 ENSMUSP00000002883.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002883.6Link to Ensembl Protein Viewer:ENSMUSP00000002883.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000002883Re-query CCDS DB by Protein ID:ENSMUSP00000002883
Original member Current member NCBI NM_016687.3 NP_057896.1 Accepted alive Link to Nucleotide Sequence:NM_016687.3Link to Protein Sequence:NP_057896.1Re-query CCDS DB by Nucleotide ID:NM_016687Re-query CCDS DB by Protein ID:NP_057896Link to BLAST:NP_057896.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057896.1 351 Q9Z1N6 351 100% 0 0

Chromosomal Locations for CCDS 26261.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 19623433 19623877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19625028 19625108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19625194 19625259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19627106 19627304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19630066 19630129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19632179 19632379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGCTCCGCTCCATCCTGGTGGCGTTATGCCTGTGGCTGCGCCTGGCGCTGGGAGTTCGCGGAGCGCCCT
GCGAAGCTGTGCGCATCCCCATGTGCAGGCACATGCCCTGGAACATCACCCGGATGCCCAACCACCTGCA
CCACAGCACTCAGGAGAACGCCATCCTGGCCATCGAACAGTATGAAGAGCTAGTGGACGTGAACTGCAGC
TCTGTGCTGCGCTTCTTCCTTTGTGCCATGTACGCACCCATCTGTACCCTGGAGTTCCTGCACGATCCCA
TCAAGCCCTGCAAGTCTGTGTGCCAGCGCGCACGTGACGACTGCGAGCCCCTCATGAAGATGTATAACCA
CAGCTGGCCAGAGAGCCTGGCCTGCGATGAGCTGCCGGTCTATGACCGTGGAGTTTGTATCTCTCCAGAG
GCAATAGTCACTGACCTTCCAGAAGATGTGAAGTGGATAGACATCACACCAGATATGATGGTGCAAGAAA
GGTCCTTTGATGCTGACTGTAAACGTCTGAGCCCTGATCGGTGCAAGTGCAAAAAGGTGAAGCCGACCCT
GGCAACATACCTGAGCAAAAACTACAGCTATGTTATTCATGCCAAAATAAAAGCCGTCCAGAGGAGTGGT
TGCAATGAGGTCACAACTGTGGTAGATGTAAAAGAGATCTTCAAGTCTTTGTCACCTATCCCTCGAACAC
AAGTCCCTCTCATCACCAATTCCTCCTGCCAGTGTCCACATATCCTGCCCCATCAAGATGTCCTAATCAT
GTGTTATGAGTGGCGTTCAAGGATGATGCTTCTTGAAAATTGCTTAGTTGAAAAGTGGAGAGATCAACTC
AGTAGAAGGTCCATACAGTGGGAAGAGAGGCTTCAGGAACAGCAGAGAACAATTCAGGACAAGAAGCAGA
TAGCCAGCCGCACCAGTCGCACCAGTCGCAGTAACCCCCCAAAGTCAAAGGGAAGGCCACCTGCTCCCAA
ACCTGCCAGTCCTAAGAAGAACATCAAAGCTAGAAGTGCCCCCAAAAAGTCAAACCTGAAGAAAAGCGCA
AGCTAA

Translation (351 aa):
MLRSILVALCLWLRLALGVRGAPCEAVRIPMCRHMPWNITRMPNHLHHSTQENAILAIEQYEELVDVNCS
SVLRFFLCAMYAPICTLEFLHDPIKPCKSVCQRARDDCEPLMKMYNHSWPESLACDELPVYDRGVCISPE
AIVTDLPEDVKWIDITPDMMVQERSFDADCKRLSPDRCKCKKVKPTLATYLSKNYSYVIHAKIKAVQRSG
CNEVTTVVDVKEIFKSLSPIPRTQVPLITNSSCQCPHILPHQDVLIMCYEWRSRMMLLENCLVEKWRDQL
SRRSIQWEERLQEQQRTIQDKKQIASRTSRTSRSNPPKSKGRPPAPKPASPKKNIKARSAPKKSNLKKSA
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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