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Report for CCDS1664.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1664.1 Public Homo sapiens 2 CPSF3 24 110 108 CCDS HistoryNCBI Gene:51692Re-query CCDS DB by CCDS ID:1664.1Re-query CCDS DB by GeneID:51692See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1664.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000238112.8 ENSP00000238112.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000238112.8Link to Ensembl Protein Viewer:ENSP00000238112.3Re-query CCDS DB by Nucleotide ID:ENST00000238112Re-query CCDS DB by Protein ID:ENSP00000238112
Original member Current member NCBI NM_016207.4 NP_057291.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016207.4Link to Protein Sequence:NP_057291.1Re-query CCDS DB by Nucleotide ID:NM_016207Re-query CCDS DB by Protein ID:NP_057291Link to BLAST:NP_057291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057291.1 684 Q9UKF6 684 100% 0 0

Chromosomal Locations for CCDS 1664.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 9423774 9423823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9428765 9428828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9429923 9430020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9430752 9430880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9432511 9432688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9433871 9433960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9436211 9436361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9440491 9440666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9441818 9441976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9443515 9443661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9448198 9448350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9452913 9453021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9455659 9455757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9456933 9457027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9459531 9459618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9467707 9467776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9471343 9471439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9472916 9473017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2055 nt):
ATGTCTGCGATTCCTGCTGAGGAGAGCGACCAGCTGCTGATCCGACCCCTTGGAGCTGGGCAAGAAGTAG
GAAGATCATGTATTATTCTCGAGTTCAAAGGAAGAAAAATAATGCTCGACTGTGGGATCCACCCTGGCCT
AGAAGGAATGGATGCTCTTCCTTATATTGATTTAATTGACCCAGCTGAGATTGATCTCCTATTAATTAGT
CATTTCCATTTGGATCACTGTGGAGCTCTGCCCTGGTTTCTACAGAAGACAAGTTTCAAAGGAAGAACAT
TTATGACTCATGCCACAAAAGCTATTTATAGATGGCTTCTTTCTGATTATGTCAAAGTTAGTAACATATC
AGCAGACGACATGCTGTATACCGAGACAGATTTGGAAGAAAGCATGGACAAAATTGAAACTATCAACTTT
CATGAAGTTAAGGAAGTTGCGGGAATCAAGTTTTGGTGTTACCATGCAGGTCACGTCCTAGGAGCCGCCA
TGTTCATGATTGAGATCGCAGGCGTGAAGCTTTTGTACACTGGTGATTTCTCAAGACAAGAAGATAGGCA
CTTAATGGCAGCTGAAATTCCTAATATTAAGCCTGATATTCTTATCATTGAATCTACTTATGGGACCCAT
ATCCATGAGAAACGTGAAGAGCGAGAAGCAAGATTCTGTAACACTGTCCACGATATTGTAAACAGAGGAG
GCAGGGGTCTCATTCCTGTCTTTGCTCTTGGAAGGGCTCAGGAGCTGCTCTTGATTCTAGATGAGTACTG
GCAGAATCACCCAGAACTACATGACATTCCAATATACTATGCATCATCTTTGGCCAAGAAGTGTATGGCA
GTGTACCAGACATATGTAAATGCCATGAATGACAAAATCCGCAAACAGATCAACATCAATAATCCCTTTG
TTTTCAAACACATTAGTAACCTCAAGAGCATGGATCATTTTGATGACATTGGTCCCAGTGTTGTAATGGC
CTCCCCAGGCATGATGCAAAGTGGCTTATCCAGAGAATTATTTGAAAGCTGGTGTACTGATAAGAGGAAT
GGTGTCATTATAGCGGGATACTGTGTAGAAGGGACACTTGCCAAGCACATCATGTCTGAACCTGAAGAAA
TCACTACTATGTCTGGACAGAAGTTACCACTGAAAATGTCTGTTGATTACATTTCTTTCTCAGCTCACAC
GGATTACCAGCAAACCAGTGAATTTATTCGTGCTTTGAAACCGCCTCATGTGATTTTAGTCCATGGAGAA
CAGAATGAAATGGCCAGATTGAAAGCAGCACTGATTCGAGAATATGAAGATAACGATGAAGTTCACATAG
AGGTTCATAATCCTCGGAATACAGAAGCAGTGACCTTAAACTTCAGAGGAGAAAAACTAGCCAAGGTTAT
GGGATTTTTAGCAGACAAAAAACCAGAACAAGGCCAGCGGGTCTCAGGAATACTTGTTAAAAGAAACTTT
AATTATCACATACTTTCTCCTTGCGACCTGTCCAATTATACTGACCTGGCCATGAGCACGGTGAAGCAGA
CCCAAGCCATTCCATATACTGGTCCCTTTAATTTGCTCTGTTACCAGCTGCAGAAATTGACAGGTGATGT
GGAAGAATTAGAAATTCAAGAAAAACCTGCTCTGAAAGTGTTCAAAAATATTACTGTAATACAAGAACCA
GGCATGGTGGTATTAGAATGGCTGGCAAACCCTTCTAATGATATGTATGCAGATACAGTAACAACTGTGA
TATTGGAAGTTCAGTCAAATCCCAAAATAAGAAAAGGTGCAGTACAGAAGGTTTCTAAAAAATTAGAAAT
GCACGTTTACAGCAAGAGGTTGGAGATCATGCTCCAGGACATATTTGGAGAAGACTGTGTAAGTGTAAAG
GATGACTCTATTCTTAGCGTCACAGTGGACGGGAAAACTGCCAACCTTAACTTGGAGACACGGACTGTAG
AATGTGAAGAGGGAAGTGAAGACGATGAATCCCTCCGAGAAATGGTGGAGCTGGCTGCACAGAGACTGTA
CGAGGCCCTGACGCCAGTTCACTGA

Translation (684 aa):
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLIS
HFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINF
HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTH
IHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMA
VYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRN
GVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNF
NYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVEELEIQEKPALKVFKNITVIQEP
GMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVK
DDSILSVTVDGKTANLNLETRTVECEEGSEDDESLREMVELAAQRLYEALTPVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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