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Report for CCDS4177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4177.1 Public Homo sapiens 5 SAR1B 24 110 108 CCDS HistoryNCBI Gene:51128Re-query CCDS DB by CCDS ID:4177.1Re-query CCDS DB by GeneID:51128See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4177.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000402673.7 ENSP00000385432.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000402673.7Link to Ensembl Protein Viewer:ENSP00000385432.2Re-query CCDS DB by Nucleotide ID:ENST00000402673Re-query CCDS DB by Protein ID:ENSP00000385432
Original member Current member EBI ENST00000439578.5 ENSP00000404997.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439578.5Link to Ensembl Protein Viewer:ENSP00000404997.1Re-query CCDS DB by Nucleotide ID:ENST00000439578Re-query CCDS DB by Protein ID:ENSP00000404997
Original member Current member NCBI NM_001033503.3 NP_001028675.1 Accepted alive Link to Nucleotide Sequence:NM_001033503.3Link to Protein Sequence:NP_001028675.1Re-query CCDS DB by Nucleotide ID:NM_001033503Re-query CCDS DB by Protein ID:NP_001028675Link to BLAST:NP_001028675.1
Original member Current member NCBI NM_016103.4 NP_057187.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016103.4Link to Protein Sequence:NP_057187.1Re-query CCDS DB by Nucleotide ID:NM_016103Re-query CCDS DB by Protein ID:NP_057187Link to BLAST:NP_057187.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028675.1 198 Q9Y6B6 198 100% 0 0
NP_057187.1 198 Q9Y6B6 198 100% 0 0

Chromosomal Locations for CCDS 4177.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134606950 134607066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134608372 134608503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134609571 134609674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134612691 134612756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134620933 134621052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134623962 134624019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGTCCTTCATATTTGATTGGATTTACAGTGGTTTCAGCAGTGTGCTACAGTTTTTAGGATTATATAAGA
AAACTGGTAAACTGGTATTTCTTGGATTGGATAATGCAGGAAAAACAACATTGCTACACATGCTAAAAGA
TGACAGACTTGGACAACATGTCCCAACATTACATCCCACTTCCGAAGAACTGACCATTGCTGGCATGACG
TTTACAACTTTTGATCTGGGTGGACATGTTCAAGCTCGAAGAGTGTGGAAAAACTACCTTCCTGCTATCA
ATGGCATTGTATTTCTGGTGGATTGTGCAGACCACGAAAGGCTGTTAGAGTCAAAAGAAGAACTTGATTC
ACTAATGACAGATGAAACCATTGCTAATGTGCCTATACTGATTCTTGGGAATAAGATCGACAGACCTGAA
GCCATCAGTGAAGAGAGGTTGCGAGAGATGTTTGGTTTATATGGTCAGACAACAGGAAAGGGGAGTATAT
CTCTGAAAGAACTGAATGCCCGACCCTTAGAAGTTTTCATGTGTAGTGTGCTCAAAAGACAAGGTTACGG
AGAAGGCTTCCGCTGGATGGCACAGTACATTGATTAA

Translation (198 aa):
MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT
FTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE
AISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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