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Report for CCDS49315.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49315.1 Reviewed, update pending Mus musculus 13 Arsk 23 108 98 CCDS HistoryNCBI Gene:77041Re-query CCDS DB by CCDS ID:49315.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 49315.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120573.2 ENSMUSP00000113274.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120573.2Link to Ensembl Protein Viewer:ENSMUSP00000113274.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120573Re-query CCDS DB by Protein ID:ENSMUSP00000113274
Original member NCBI NM_029847.4 NP_084123.2 Updated not alive Link to Nucleotide Sequence:NM_029847.4Link to Protein Sequence:NP_084123.2Re-query CCDS DB by Nucleotide ID:NM_029847Re-query CCDS DB by Protein ID:NP_084123
Current member NCBI NM_029847.5 NP_084123.3 Pending alive Link to Nucleotide Sequence:NM_029847.5Link to Protein Sequence:NP_084123.3Re-query CCDS DB by Nucleotide ID:NM_029847Re-query CCDS DB by Protein ID:NP_084123Link to BLAST:NP_084123.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084123.3 553 Q9D2L1 553 100% 0 0

Chromosomal Locations for CCDS 49315.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 76062256 76062602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76065280 76065504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76066635 76066859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76072100 76072271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76074775 76075051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76091658 76091817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76093888 76094017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76098374 76098508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1671 nt):
ATGCCCGCGATGCTGTTGCTGTTGGTGTCGGTGGTCGCAGCGTTAGCACTCGCAGCACCGGCCCCCAGAA
CACAGAAGAAAAGGATGCAAGTGAACCAGGCGCCCAACGTGGTGCTGGTCGCCAGTGACTCCTTCGATGG
AAGACTAACATTTCAACCAGGAAGTCAGGTAGTAAAACTTCCCTTCATTAACTTCATGAGAGCACATGGC
ACCACCTTCCTAAATGCCTACACTAATTCACCCATCTGCTGTCCATCACGTGCAGCAATGTGGAGTGGCC
TCTTCACTCACTTGACAGAATCTTGGAATAATTTTAAGGGTCTGGATCCAAATTATACGACATGGATGGA
CATCATGGAGAAGCATGGCTATCAGACACAGAAATTTGGAAAAGTGGACTATACTTCAGGACATCATTCC
ATTAGTAACCGTGTGGAAGCATGGACAAGAGATGTTGCATTCTTGCTCCGACAAGAAGGCAGACCCATAA
TTAATCTTATCCCTGATAAGAATAGAAGGAGAGTGATGACCAAGGACTGGCAGAATACAGACAAAGCAAT
CGAATGGCTAAGACAGGTTAACTACACCAAGCCATTTGTCCTTTACTTGGGATTGAATTTGCCACACCCT
TACCCTTCACCATCTTCAGGAGAAAACTTTGGCTCTTCTACGTTTCACACTTCCCTTTACTGGCTTGAAA
AGGTAGCTTATGATGCAATCAAAATCCCAAAGTGGTTGACTTTGTCACAAATGCACCCTGTGGATTTTTA
CTCCTCCTATACAAAAAACTGCACTGGGAAATTTACTGAAAATGAAATTAAGAACATTAGAGCATTTTAT
TATGCTATGTGTGCTGAGACAGATGCCATGCTAGGTGAAATTATTTTGGCTCTTCACAAGTTAGATCTTC
TTCAGAAAACTATTGTTATATATACCTCAGACCATGGAGAGATGGCTATGGAACACCGCCAGTTTTATAA
AATGAGTATGTATGAAGCTAGTGTCCATGTTCCTCTTCTGATGATGGGACCAGGAATTAAGGCCAACCTA
CAAGTACCAAGTGTTGTTTCTCTTGTGGATATCTACCCTACTATGCTTGACATTGCTGGGATTGCTCTGC
CTCCAAATCTGAGTGGATACTCCTTGTTGACGCTGTTGTCAAATGCATCTGCAAATGAACAGGCATTCAA
ATTCCACCGTCCACCTTGGATTCTGAGTGAATTCCATGGATGCAATGCAAATGCTTCTACCTACATGCTA
CGAACTGGCCAGTGGAAGTACATAGCCTACGCTGATGGTGCTTCCGTGCAGCCTCAGCTCTTCGATCTTT
CCTTGGATCCGGATGAGCTAACAAACATTGCTACAGAATTTCCAGAAATTACTTATTCTTTGGACCAGAA
GCTTCGTTCTATTGTAAACTACCCTAAAGTGTCTGCTTCTGTCCATCAGTACAATAAAGAACAGTTTATC
ATGTGGAAGCAAAGCGTAGGGCAAAATTACTCAAACGTTATAGCACACCTCAGATGGCATCAAGATTGGC
AGAGAGATCCAAGGAAGTATGAAAATGCAATCCAACATTGGCTCACAGCCCACTCCAGTCCACTGGCTAG
CAGCCCAACCCAGTCCACCAGTGGCTCACAGCCCACTCTTCCCCAGTCCACCAGTGGCTAG

Translation (556 aa):
MPAMLLLLVSVVAALALAAPAPRTQKKRMQVNQAPNVVLVASDSFDGRLTFQPGSQVVKLPFINFMRAHG
TTFLNAYTNSPICCPSRAAMWSGLFTHLTESWNNFKGLDPNYTTWMDIMEKHGYQTQKFGKVDYTSGHHS
ISNRVEAWTRDVAFLLRQEGRPIINLIPDKNRRRVMTKDWQNTDKAIEWLRQVNYTKPFVLYLGLNLPHP
YPSPSSGENFGSSTFHTSLYWLEKVAYDAIKIPKWLTLSQMHPVDFYSSYTKNCTGKFTENEIKNIRAFY
YAMCAETDAMLGEIILALHKLDLLQKTIVIYTSDHGEMAMEHRQFYKMSMYEASVHVPLLMMGPGIKANL
QVPSVVSLVDIYPTMLDIAGIALPPNLSGYSLLTLLSNASANEQAFKFHRPPWILSEFHGCNANASTYML
RTGQWKYIAYADGASVQPQLFDLSLDPDELTNIATEFPEITYSLDQKLRSIVNYPKVSASVHQYNKEQFI
MWKQSVGQNYSNVIAHLRWHQDWQRDPRKYENAIQHWLTAHSSPLASSPTQSTSGSQPTLPQSTSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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