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Report for CCDS21384.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21384.1 Public Mus musculus 7 Ticrr 23 108 98 CCDS HistoryNCBI Gene:77011Re-query CCDS DB by CCDS ID:21384.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21384.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035977.8 ENSMUSP00000041377.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035977.8Link to Ensembl Protein Viewer:ENSMUSP00000041377.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035977Re-query CCDS DB by Protein ID:ENSMUSP00000041377
Original member Current member NCBI NM_029835.1 NP_084111.1 Accepted alive Link to Nucleotide Sequence:NM_029835.1Link to Protein Sequence:NP_084111.1Re-query CCDS DB by Nucleotide ID:NM_029835Re-query CCDS DB by Protein ID:NP_084111Link to BLAST:NP_084111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084111.1 1889 Q8BQ33 1889 100% 0 0

Chromosomal Locations for CCDS 21384.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 79660340 79661002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79665663 79665939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79667660 79667898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79669448 79669682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79670866 79670995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79675272 79675408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79677227 79677445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79679015 79679166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79680908 79681008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79681810 79681903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79681990 79682069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79682249 79682476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79682956 79683052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79684204 79684261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79685777 79685938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79688226 79688316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79689908 79689966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79690872 79691003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79691822 79691979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79693701 79695822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79695935 79696060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79696654 79696763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5670 nt):
ATGGCCTGCTGTCACAAAGTGATGCTGCTGGTGGACACAGCGGGCGTCTCTGCTCCTCATAGCCCGGCCC
GACGCGCCGCCCTCCGGCTCCTCACTTACCTGAGCTGCCGCTTCGGCCTTGCCAGGGTCCACTGGACCTT
CAAGTTCTTCGACTCTCAGGGGGCACGGAGCCGGCCCTCCCGCGTGTCCGACTTCCGCGAGCTGGGGAGC
CGCTCCTGGGAGGACTTCGAGGAGGAGCTGGAGGCCAGGCTGGGGGATCGCCCTCCCGGAGCTCACCTGC
CGGGCCCGACGCCCAGAGCCACCCACACGCACGGTGCCCTGATGGAGACGCTGCTCGACTACCAGTGGGA
CCGGCCGGAGATCACGTCGCCCACCAAGCCGATCCTGCGGAGTAGCGGCAGGAGGCTGCTGGACGCCGAC
GGCGAGGCCAGGGAGGCCCAGGCCGCGCTCGGGGGCTTTGGGAACGCCGTCTTCCTCCTGGCGCCCTGTC
CTCACTCGCAGAGGGAGCTGCTTCAGTTCGTGTCCGGGTGCGAGGCACAGGCTCAACGCGTGCCGCTCAC
CCCCAAGCAGGTGATGGAGAAGGTGTTGCCCAAGAGAGTCCAAGAGGTTATGATCGCCCGAAATATCACC
TTGTACTGGGTGGACACCACCGAGCGATCTAAGTTGTGGGCTTCCCCAGACCATGTTGGATACTGGACAG
TGTGTGAGCTGCTACACCATGGAGGAGGTACCATCTTGCCAGCTGAAACTTGGAGCCTGGGATTTACTAA
AGCCAGGGAAACAGTGCTGCCATGTGGTGGCGAGCTGTCACACAAACCTCACCCCTCCCCGTGGATCTCA
GCTCTGCCAATAGATGCCACTGTAAACTGTTTGCTGTATAATTCTGAGTATGAAGCCTCATTTCCACGAA
TTGAAGGAACATTATTTCTCCCTGTTCAAGGCAAAGAAATTGAAGAAACATGGGCAATCTCCCTGGAGCC
TTTAGCCATGCATCAGAGACATTTTCAAAAGCCAGTCAGAATTGTCCTAAGAGGCTCAGTGGCACAGTGG
TCTCTCCCAGTGAGTAGTGCTTTAGGCACTGACAGTTGGATGCTACAAAGTCCAGAGGAACACAGGTCAA
CTCAAAGGCTGTTGTTTCAGGAGCTGGTAAGCAGGCTGACTGCTGAAGAATTCCATCTGGTTGCCAGTGT
GGATCCTGGTGAAGGCTGGCCCCCCATAACGGGAATTATTTCCCCATTCTCTGCCAATGCCATGATTCTC
ACAGTGTTCCGAGCCAAAGAAGCTGAATTTCAAAGCCATTTTCTCCAAACAGCTGCGACTGAAGGTTCCC
AGGATACAGCTTCCCTTTTCTCAGATGTTGTAGATAGTGTCCTGAATCAGAGTCATAATTTATTTGAAGA
CCCTGCGTCTTCTGCCCCCTGTGTTCCAGAGTGGGTCCAGCAGGAGCTTAGTCATACCAGCTCCTGGAGT
CCAGCTCTTGTCGAAAAGTGGTTTCCTTTCTCCAACGCCAGTGGTGCTACTTCAGACTTGATGGAATCAT
TTTGGTTGTTACACGCTGCCTCACCTGATAATGATGAATCCTCCAAAACCGAAAGTGAACTAACACGCTG
CCTCTCTGAGCTCTACCAGAGATCTCACGAAGAATCTACTGTAGTCAATCAAGAACGCAGCAGAAAGAAA
CGTGGTATCCCTCGAACTCCAGTGAGACAGAAGATGAATACCATGTCCCGCTCCTTGAAGATGTTGAATG
TGGCAAGGCTAAATGTAAAGGCTCAGAAATTACATCCAGATGGTAGTCCAGACACGGCTGTAGAGAAAGG
GCTCCAGAAAGCTGTCATTGGCAGAACAGCAGACAAATTGGAAGATAGAGGAAGGATATTAAGAAGTTCT
AAACTTAAAGAATTTAAAACCGAGGAGGAGCTTCTGGCTTACATACATGACAACTACCAAAAGGCTGTGG
CTACGGAAGAAATCACATTGTATTCATGTGCACAAAATATGGTCTCAACCATTAAAATGTTCCTAAAATC
AAAGGACATCAAGGAATTAGAAGTGGCCTGCCTGAGTCATGTGAACAGTAACCTCTTAAAAACCAGCAAG
ACCCTTAGACAGAACCTAGCCGGAAAGATGGATACAGAGGACAAAGTCGGAGAGTGCCAGCTTCAGGTAT
TTCTTCGTCTGGAGATGTGTGAGCAGTGCCCCTCAGTCCTGGACCGCCCAGATGAGGTGGAGCGCATAGT
GGAGGAGGTGACAGATTTGCTGCGTCTGGTGTGTCTCACTAAGGACTCAGCGTACCTGTCAGAGTTTCTG
GAGGAGATCTTGAGATTGTATATTGGCTCCATCCCCGGGACAATTGGACAACTCTACCACAGCCTGGGGT
TAAAAATTCCTCAGAAGCTGGCTGGAGTCCTTCCTACAGGGTTTTTCAGTGATGATTCTATGTCTCAAGA
GAGCATGTCACCACCTCCCTCATCAAGTACTCACAGATCAGTGTCGGCCATTACTGAGTCTGAGCAGCTG
GAGGAGCTTCGGACCAGATCAGCCAAGAAGAGAAGGAAAAATGCACTAATAAGACATAAAAGTATTGCAG
AGATTTCCCAGACTCTTCGACAAATTGAAGTTCCCAAAGTGTCCAAGAGAGCTACAAGAAATGAGAACTC
CCACTCTGCTTCCATACAGCTGCCAGTCCCGAGGAAAGACACAATACAGGAAGTAACAAAAGTTCGAAGA
AACCTCTTCAACCAGGAAATGCTTTCTCCTTCAAAGAGGGGGCTAAAGAAGGGGCTGCCTCGCAGCCATT
CTGTATCTGCTTTGGAATGTCTCCACCATAAACAGGACAAGTTCAAGAAGACCAAAAGCAGCACATTTCA
GGGTTATTGCAAACTGCTGACTAAGAGTGTGGCTGAGACCCCAGTCCACAAGCAAATCTCCAGGAGGCTG
CTCCATAGACAAATCAAGGGCAGGTCTTCTGATCCTGGTCCTGATATTCATGTAGTTGAAGAGTCTCCTG
AAAAAGAGGATGAAATGACTTTGAGAAGAAGTCCTCGAATCAAGCAGCTGTCATTTAGCAGAACGAACTC
TGGCTCCTTCTATTCTGTATCTCAGCCGAAATCTCGAAGTGTGCAAAGAATCCACTCGTCCCAGCAGGAG
TCAGAACAAAGAGAAAATTTTCCAGTTCAAAGTATTCAGTCTCCTAAAACACTTCTTTTTGGGGCATTGT
CTGAGATTCCCAGCTCCTCTAAGAAGGGTTCAGCCCAAATTAAGAGATCCTTAAGAAGCATGTTGGATTC
TGAGATATCTACATCTTACGAGACTCCCAAAAAGAGTAACCAGAAATCTCCAAGCTTTTCTAAAACTACA
CCAAGAAGATTCCCTCGTACAGCACAGACCTTACTATACACTCCAGAAAGACTACAAAACTCCCCTACAG
AAATGACATCAGCTGAAGGGACCATTTCTGAAGCAACCATAAAAACCCCCTCCTCACACGGTTACAACTC
ACCATTTGCATCAAAAGTCACTTCTCAAAAGACAGTCTCCCCAGCAAAAGAAGAGACCTCTCCTCCCCTC
ACAAAGCTACCCAGCACACCCAGAGAGTCTGATGTCCAGCCACCTCAATGTTCGTCAGACTGCACATGGC
CACACTCAGTGAATTCCAGTCCAGAAGGTCCTTATTACCCAGCGTCCCCACCTCCTATGGCTGGCCAGGC
CAGGAGTCAGTGTCTGACCCCTATAAGATACTCCTTCAGAACCCCTCCACGTACAGCCCTTGCTGGCACG
TCTAAGCAGCAGGAGCACCAAGAGCTCCCTCTCCCCAGGGCCTCTCAGACACAAGAACCTCCACAGGGAC
TGGAGAAGAAAGCTCTCAAAATCCCAAAGAAACCAGCACACACAAGTACTTCACCTCTTTCTCCAGAGGA
ACATTATTCTGGATGTGATGTCTCCCCACATCAACCTAGGAACTCTTTGTCAGCCTCCCCTCCTCCTGGA
GAACTGAATTGGAAAGAACACCAGACATCACCCAGTGTAACTTCATCTGTCTCTTGTCCTGTTCCTTCAA
CTCCTCCTAGAACCCCACAGAGAATGACCTGCCCCATACCACCTTCTCCACCATCCAAGCTTCGGAGATC
ATGTAGAAAGAAGTCCTGTCCTCCTCAGGACTTCCCAGAGTGCCATCCTGGACCCTCTGCTGCTCCCGTG
CTTAGCTCAGCCACCAGCCCAGGAGCTGTCACAGGCTCTAGAGAGGAGCAGTCTCAGTTTTCTGAAGGAC
AGAGTTACCTAGGCACTGGTTTCAGAAGTGACTGTCATGTGTCCTCTCCTGTGCTCACTGCAAGTGACAC
AAAGTGCTTGCCACTGATTGATGAAGCCCAACTCCATGGGCTTAAAAACCAAGAGGTAAAAAGTGGCATC
TTGCCAGGGGAAGAAGGTGAGGAACCAGAGAGCACTATTGCCGACGAGCTTCCCTCTGTGTCTGACCCTG
GGATTCTTGTACCTGCGCCTTCCTCTGTGTCTAGCTCCTCTGAGCTGCTGCCCTACCCCCTGTGCTGTAC
AGCAGACGGAAAGCAGAGGCAAGATGCTGCTCAGCAGGGGAGTCCACGAGCTTCCGAGGCCACCAGCAGC
CCTCAGACCTACGAAGTTGAGCTGGAGATGCAAGCTTCTGGCCTTCCCAAGCTCCGGATTAAAAAAATAG
ACCCTGGAGTTCTTTTGGAAGCTGAGGCCCTAGGAAAGGAAGCCCCCCTGGGAGAGGAGGGTGCCCTCCC
TGCTCTCTGTATGCCCAAGGCCAGCAAGTCCTCCGGGAGAACTGAGCACCCTTACTTGTCACCCCCTTGT
CTCCGCCCCTCACACAGCACACCTGGCAAGAATGGAGGTCAAACCTTCATCTGCCAATCTTGTACTCCCT
CTCGCTGTCCCCCCAGTACCCCCTCTCCATTTCAAGCAGATGCTGGGGTTTCTTGGACACCATCCCCTAA
GCAAAGTGGGAAGACCACTCCTGAAATTATCAAAGACTGGCCCCGCAGGAAGAGGGCAGTGGATTGCAGT
GCTGGACCCTCTGCTGGGAGAGGCGAGGCCAGTATGGACCTTCCTGGGTCCTTGTCACTGCTTGAGCCTG
AGCCTGAGGGAAAGGAGCGAAGCCTTGAACAAGACCTCTCTAAGGTTCTCATCTCAGAGGAGTTTGAACT
AGAGGGGGTGTGTCAGTTGCCAGACCAGTCACCTCCCAAAGACAGTGCCTCTGTGACAGAGGAAACCTCC
TGGGGACAGTTTGGATTAGGCAGAAAGAGATTCCTGTCCGCCAAGGAAGAATCTGAATACAAAGTCAAAA
GGGTCTGTGATTCCCTGAGTGAGGATCCCCAAGCTAGCAAGCAGAAAGAGTGCTCTCCACGCTGGAGTGC
ACTACCACTCCACTCAGTAGGGGACGACGAGGTGTTTGTTTCTGGCTCCACCCCACCCTCTGGTTGCATG
GTTCGAAGCTGTCTCTCTGCCAGTGGTCTGCAGGCCTTGACCCAGTCTCCACTGCTGTTCCAAGGAAGAA
CGCCCTCCTCTCATAGCACGGACACCAGAGATGAGGAAGTGGATGTGTTCCCCTCTACTGCTGAAGAGTC
TCCGTTCAGCCACACCCTCTCCCGGAAACGGCCTTTCAGAACCTACACGAGAAAGAAGCTTATTAGCTAG

Translation (1889 aa):
MACCHKVMLLVDTAGVSAPHSPARRAALRLLTYLSCRFGLARVHWTFKFFDSQGARSRPSRVSDFRELGS
RSWEDFEEELEARLGDRPPGAHLPGPTPRATHTHGALMETLLDYQWDRPEITSPTKPILRSSGRRLLDAD
GEAREAQAALGGFGNAVFLLAPCPHSQRELLQFVSGCEAQAQRVPLTPKQVMEKVLPKRVQEVMIARNIT
LYWVDTTERSKLWASPDHVGYWTVCELLHHGGGTILPAETWSLGFTKARETVLPCGGELSHKPHPSPWIS
ALPIDATVNCLLYNSEYEASFPRIEGTLFLPVQGKEIEETWAISLEPLAMHQRHFQKPVRIVLRGSVAQW
SLPVSSALGTDSWMLQSPEEHRSTQRLLFQELVSRLTAEEFHLVASVDPGEGWPPITGIISPFSANAMIL
TVFRAKEAEFQSHFLQTAATEGSQDTASLFSDVVDSVLNQSHNLFEDPASSAPCVPEWVQQELSHTSSWS
PALVEKWFPFSNASGATSDLMESFWLLHAASPDNDESSKTESELTRCLSELYQRSHEESTVVNQERSRKK
RGIPRTPVRQKMNTMSRSLKMLNVARLNVKAQKLHPDGSPDTAVEKGLQKAVIGRTADKLEDRGRILRSS
KLKEFKTEEELLAYIHDNYQKAVATEEITLYSCAQNMVSTIKMFLKSKDIKELEVACLSHVNSNLLKTSK
TLRQNLAGKMDTEDKVGECQLQVFLRLEMCEQCPSVLDRPDEVERIVEEVTDLLRLVCLTKDSAYLSEFL
EEILRLYIGSIPGTIGQLYHSLGLKIPQKLAGVLPTGFFSDDSMSQESMSPPPSSSTHRSVSAITESEQL
EELRTRSAKKRRKNALIRHKSIAEISQTLRQIEVPKVSKRATRNENSHSASIQLPVPRKDTIQEVTKVRR
NLFNQEMLSPSKRGLKKGLPRSHSVSALECLHHKQDKFKKTKSSTFQGYCKLLTKSVAETPVHKQISRRL
LHRQIKGRSSDPGPDIHVVEESPEKEDEMTLRRSPRIKQLSFSRTNSGSFYSVSQPKSRSVQRIHSSQQE
SEQRENFPVQSIQSPKTLLFGALSEIPSSSKKGSAQIKRSLRSMLDSEISTSYETPKKSNQKSPSFSKTT
PRRFPRTAQTLLYTPERLQNSPTEMTSAEGTISEATIKTPSSHGYNSPFASKVTSQKTVSPAKEETSPPL
TKLPSTPRESDVQPPQCSSDCTWPHSVNSSPEGPYYPASPPPMAGQARSQCLTPIRYSFRTPPRTALAGT
SKQQEHQELPLPRASQTQEPPQGLEKKALKIPKKPAHTSTSPLSPEEHYSGCDVSPHQPRNSLSASPPPG
ELNWKEHQTSPSVTSSVSCPVPSTPPRTPQRMTCPIPPSPPSKLRRSCRKKSCPPQDFPECHPGPSAAPV
LSSATSPGAVTGSREEQSQFSEGQSYLGTGFRSDCHVSSPVLTASDTKCLPLIDEAQLHGLKNQEVKSGI
LPGEEGEEPESTIADELPSVSDPGILVPAPSSVSSSSELLPYPLCCTADGKQRQDAAQQGSPRASEATSS
PQTYEVELEMQASGLPKLRIKKIDPGVLLEAEALGKEAPLGEEGALPALCMPKASKSSGRTEHPYLSPPC
LRPSHSTPGKNGGQTFICQSCTPSRCPPSTPSPFQADAGVSWTPSPKQSGKTTPEIIKDWPRRKRAVDCS
AGPSAGRGEASMDLPGSLSLLEPEPEGKERSLEQDLSKVLISEEFELEGVCQLPDQSPPKDSASVTEETS
WGQFGLGRKRFLSAKEESEYKVKRVCDSLSEDPQASKQKECSPRWSALPLHSVGDDEVFVSGSTPPSGCM
VRSCLSASGLQALTQSPLLFQGRTPSSHSTDTRDEEVDVFPSTAEESPFSHTLSRKRPFRTYTRKKLIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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