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Report for CCDS40679.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40679.1 Public Mus musculus 9 Fam81a 23 108 98 CCDS HistoryNCBI Gene:76886Re-query CCDS DB by CCDS ID:40679.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40679.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034749.15 ENSMUSP00000034749.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034749.15Link to Ensembl Protein Viewer:ENSMUSP00000034749.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034749Re-query CCDS DB by Protein ID:ENSMUSP00000034749
Original member NCBI NM_029784.2 NP_084060.1 Updated not alive Link to Nucleotide Sequence:NM_029784.2Link to Protein Sequence:NP_084060.1Re-query CCDS DB by Nucleotide ID:NM_029784Re-query CCDS DB by Protein ID:NP_084060
Current member NCBI NM_029784.3 NP_084060.1 Accepted alive Link to Nucleotide Sequence:NM_029784.3Link to Protein Sequence:NP_084060.1Re-query CCDS DB by Nucleotide ID:NM_029784Re-query CCDS DB by Protein ID:NP_084060Link to BLAST:NP_084060.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084060.1 364 Q3UXZ6 364 100% 0 0

Chromosomal Locations for CCDS 40679.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 70090767 70090891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70093491 70093683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70096051 70096186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70099088 70099194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70102820 70102949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70110258 70110376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70124924 70125197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70126187 70126197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGCATCTAAGGCGAGTGAAGACCATGCCCCGACACAGCCAGTCCCTGACCATGGCGCCGTACTCTTCTG
TGAGTCTGGTGGAGCAGCTGGAAGACAGGATCCTCTGTCATGAGAAAACCACAGCAGCACTGGTGGAGCA
TGCCTTCCGCATCAAAGATGACATCGTCAGCAGTTTGCAGAAGATGCAGAATAAAGGGGGAGGTGACCGC
TTAGCCAGGCTGTTCTTGGAAGAGCATATCAGAAACATAACCGCCATTGTGAAGCAACTGAATCGGGATA
TTGAGGTTCTCCAGGAGCAGATCCGTGCCAGGGACAACATCAGCTATGGAACTAATTCTGCCTTAAAGAC
GCTGGAGATGCGCCAGCTCTCTGGCTTGGGAGATCTCCGAGGAAGAGTTGCAAGGTGCGACGCCAGCATA
GCCAGGCTCTCTGCCGAGCATAAGTCGACCTACGAGGGACTCCAGCACTTGAACAAGGAACAGCAAGCAG
CCAAGCTTATCCTGGAAACAAAAATCAAAGACGCAGAAGGACAGATTTCTCAGCTTTTGAGCAGAGTGGA
CTTGTCCATCTCAGAGCAGAGCACCAAACTGAAGATGTCCCACAGGGACAGCAACCACCAGCTCCAGCTC
CTGGACACTAAATTTAAAGGCACCGTTGAAGAGCTCAGCAACCAGATTTTGTCTGCACGGAGTTGGCTGC
AACAAGAACAGGAGCGGATAGAGAAAGAACTTCTGCAGAAAATAGACCATCTCTCCTTGATTGTTAAGGA
AAACAGTGGAGCCAATGAAAGAGACGTAGAGAAGAAACTCAGCCAGATGTCGGCCAGGCTTGACAAAATC
GAAGAGAGTCAGAAGAGGAATGCTGAAGGACAGAGAAAGCCGGACGAGGAGAAGGTGCACGGGCGGATCA
GCAAGCTGGAGCTACAGATGACGGAGGACATGAAGGAGATGAAAGCGGAGGTTAATGCCGGGTTCTCAGC
CATCTATGAGAGCATAGGGTCCCTCAGACAAGTGCTGGAGGCCAAGATGAAGCTGGACAGGGACCAACTT
CAGAAGCAGATCCAGCAGATGCAGAAGCCAGAGACCGCCATGTGA

Translation (364 aa):
MHLRRVKTMPRHSQSLTMAPYSSVSLVEQLEDRILCHEKTTAALVEHAFRIKDDIVSSLQKMQNKGGGDR
LARLFLEEHIRNITAIVKQLNRDIEVLQEQIRARDNISYGTNSALKTLEMRQLSGLGDLRGRVARCDASI
ARLSAEHKSTYEGLQHLNKEQQAAKLILETKIKDAEGQISQLLSRVDLSISEQSTKLKMSHRDSNHQLQL
LDTKFKGTVEELSNQILSARSWLQQEQERIEKELLQKIDHLSLIVKENSGANERDVEKKLSQMSARLDKI
EESQKRNAEGQRKPDEEKVHGRISKLELQMTEDMKEMKAEVNAGFSAIYESIGSLRQVLEAKMKLDRDQL
QKQIQQMQKPETAM


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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