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Report for CCDS18522.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18522.1 Public Mus musculus 4 Hectd3 23 108 98 CCDS HistoryNCBI Gene:76608Re-query CCDS DB by CCDS ID:18522.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18522.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050067.9 ENSMUSP00000051922.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050067.9Link to Ensembl Protein Viewer:ENSMUSP00000051922.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000050067Re-query CCDS DB by Protein ID:ENSMUSP00000051922
Original member Current member NCBI NM_175244.4 NP_780453.1 Accepted alive Link to Nucleotide Sequence:NM_175244.4Link to Protein Sequence:NP_780453.1Re-query CCDS DB by Nucleotide ID:NM_175244Re-query CCDS DB by Protein ID:NP_780453Link to BLAST:NP_780453.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780453.1 861 Q3U487-1 861 100% 0 0

Chromosomal Locations for CCDS 18522.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 116995403 116995771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116995947 116996107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116996361 116996453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116996532 116996667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116996914 116997029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116997118 116997231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116997348 116997430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116998377 116998542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116998744 116998825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116999578 116999760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116999889 116999941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117000089 117000153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117000247 117000350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117000597 117000716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117000822 117000911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117002116 117002322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117002510 117002639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117002737 117002811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117002934 117003015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117003119 117003190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117003282 117003366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2586 nt):
ATGGCCGGCCCTGGCCCCGGCGCGGCGCTTGAGTCCCCGCGGCAGCTCCTGGGTCGCGTGCGCTTCCTGG
CGGAGGCGGCGCGGAGCCTCCGGGCCGGGCTGCCACTGCCTGCGGCGCTAGCTTTCGTGCCGCGGGAAGT
GCTCTACAAGCTGTACAAGGACCCGGCGGGACCCTCGCGCGTGCTGCTGCCCGTGTGGGAAGCAGAGGGC
CTGGGGCTGCGTGTGGGAGCCGTGGGCGCTGCCCCGGGCACAGGCTCTGGACCCCTGCGCGCCGCCCGTG
ACAGTATCGAGCTCCGGCGCGGCGCCTGTGTGCGCACCACTGGCGAGGAGCTGTGCAACGGCCACGGGCT
CTGGGTGAAGTTGACCAAGGAGCAGCTGGCCGAACACCTGAGTGACTGTAGTCTGGACGAAGGCTGGCTT
CTAGTGTGTCGACCAGCAGAGGGCGGAGCCCGCCTTGTACCTATTGACACTCCCGACCACCTGCAGCGGC
AGCAGCAGCTATTTGGCGTGGACTACCGGCCGGTGCTCAGATGGGAACAGGTAGTGGACCTGACCTATTC
ACATCGCCTGGGATCCAGGCCTCAGCCAGCAGAGGCATATACAGAAGCTATACAAAGGCTACTCTATGTG
CCCCCAACATGGACATATGAGTGCGACGAGGACCTGATCCACTTCTTATATGACCACCTGGGCAAAGAAG
ATGAGAACCTGGGTAGTGTGAAGCAGTATGTGGAGAGCATAGATGTTTCTTCCTATACGGAGGAGTTCAA
TGTGTCCTGCCTGACAGATAGCAACGCAGATACCTACTGGGAGAGTGATGGGTCCCAGTGCCAACACTGG
GTACGGCTTACCATGAAGAAAGGCACAATTGTCAAGAAGCTGCTACTCACAGTGGATACCACAGATGACA
ACTTCATGCCGAAACGGGTAGTAGTCTATGGGGGTGAAGGGGACAACCTGAAGAAGCTGAGTGACGTGAA
CATTGATGAGACCCTGATCGGGGATGTCTGTGTATTAGAGGACATGACCGTCCACCTTCCAATCATTGAG
ATCCGAATCGTTGAGTGTCGAGATGATGGGATCGATGTCCGTCTTCGAGGGGTAAAGATCAAGTCATCTA
GACAGCGGGAGCTGGGGCTGAATGCAGACCTGTTCCAGCCGGCCAGTCTGGTGCGATATCCACGCCTGGA
AGGCACTGACCCAGAAGTACTATACCGCAGAGCTGTCCTTCTGCAGAGATTCATCAAAATTCTGGACAGT
GTCCTGCACCACCTAGTACCTGCATGGGACCACACCCTGGGCACCTTTAGTGAGATTAAGCAAGTGAAAC
AGTTCCTACTGTTGTCACGCCAGCGGCCCAGCCTGGTAGCACAGTGCCTGCGTGATTCAGAAAGCAGCAA
GCCCAGCTTCATGCCGAGGCTGTACATCAACCGCCGCCTTGCCATGGAACACCGTGCCTGCCCTTCTCGG
GACCCTGCCTGCAAGAATGCAGTCTTCACCCAGGTTTATGAAGGTCTCAAGCCTTCTGACAAGTATGAGA
AGCCCTTGGACTACAGGTGGCCCATGCGCTATGACCAGTGGTGGGAATGTAAATTCATTGCGGAAGGGAT
CATTGACCAAGGAGGTGGCTTCCGTGACAGCCTGGCAGATATGTCAGAAGAACTGTGCCCCAGCTCAGCT
GACACCCCTGTGCCTCTGCCCTTCTTTGTGCGCACAGCGAACCAGGGCAATGGCACTGGTGAGGCCCGGG
ACATGTATGTGCCAAATCCCTCTTGCCGAGACTTTGCCAAGTATGAGTGGATTGGACAGTTGATGGGGGC
TGCCCTTCGGGGTAAGGAGTTCCTGGTCCTGGCCCTGCCTGGGTTTGTGTGGAAGCAGCTGTCTGGAGAG
GAAGTGAGCTGGAGCAAGGACTTCCCAGCTGTGGACTCCGTGCTGGTGAAGCTCCTGGAAGTGATGGAAG
GAGTGGACAAGGAGACGTTTGAGTTCAAGTTTGGGAAGGAGCTGACATTCACCACCGTCCTGAGTGACCA
ACAGGTCGTGGAGCTGATTCCTGGGGGCACGGGCATCGTGGTGGAATATGAGGATCGCTCCCGTTTCATC
CAGCTGGTGCGGAAGGCGCGGCTAGAGGAGAGCAAGGAGCAGGTGGCAGCCATGCAGGCAGGTCTGCTGA
AGGTGGTACCACAGGCTGTGCTGGACTTGCTGACCTGGCAAGAGTTGGAAAAGAAGGTGTGTGGGGACCC
AGAGGTCACTGTGGATGCTCTGCGCAAGCTCACTCGGTTTGAGGACTTCGAACCATCTGACACACGCGTG
CAGTACTTTTGGGAGGCTCTGAACAATTTCACCAATGAGGACCGGAGCCGTTTCCTGCGCTTTGTCACCG
GCCGCAGCCGCCTCCCTGCTCGGATCTACATTTACCCAGACAAACTGGGCTATGAGACCACAGACGCCCT
GCCTGAGTCTTCTACCTGCTCCAGCACGCTCTTCCTCCCACACTATGCCAGTGCCAAGGTATGCGAGGAG
AAGCTCCGCTACGCCGCGTACAACTGTGTGGCCATCGACACGGACATGAGTCCCTGGGAGGAGTGA

Translation (861 aa):
MAGPGPGAALESPRQLLGRVRFLAEAARSLRAGLPLPAALAFVPREVLYKLYKDPAGPSRVLLPVWEAEG
LGLRVGAVGAAPGTGSGPLRAARDSIELRRGACVRTTGEELCNGHGLWVKLTKEQLAEHLSDCSLDEGWL
LVCRPAEGGARLVPIDTPDHLQRQQQLFGVDYRPVLRWEQVVDLTYSHRLGSRPQPAEAYTEAIQRLLYV
PPTWTYECDEDLIHFLYDHLGKEDENLGSVKQYVESIDVSSYTEEFNVSCLTDSNADTYWESDGSQCQHW
VRLTMKKGTIVKKLLLTVDTTDDNFMPKRVVVYGGEGDNLKKLSDVNIDETLIGDVCVLEDMTVHLPIIE
IRIVECRDDGIDVRLRGVKIKSSRQRELGLNADLFQPASLVRYPRLEGTDPEVLYRRAVLLQRFIKILDS
VLHHLVPAWDHTLGTFSEIKQVKQFLLLSRQRPSLVAQCLRDSESSKPSFMPRLYINRRLAMEHRACPSR
DPACKNAVFTQVYEGLKPSDKYEKPLDYRWPMRYDQWWECKFIAEGIIDQGGGFRDSLADMSEELCPSSA
DTPVPLPFFVRTANQGNGTGEARDMYVPNPSCRDFAKYEWIGQLMGAALRGKEFLVLALPGFVWKQLSGE
EVSWSKDFPAVDSVLVKLLEVMEGVDKETFEFKFGKELTFTTVLSDQQVVELIPGGTGIVVEYEDRSRFI
QLVRKARLEESKEQVAAMQAGLLKVVPQAVLDLLTWQELEKKVCGDPEVTVDALRKLTRFEDFEPSDTRV
QYFWEALNNFTNEDRSRFLRFVTGRSRLPARIYIYPDKLGYETTDALPESSTCSSTLFLPHYASAKVCEE
KLRYAAYNCVAIDTDMSPWEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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