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Report for CCDS29148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29148.1 Public Mus musculus 18 Dnajc18 23 108 98 CCDS HistoryNCBI Gene:76594Re-query CCDS DB by CCDS ID:29148.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29148.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025208.6 ENSMUSP00000025208.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025208.6Link to Ensembl Protein Viewer:ENSMUSP00000025208.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025208Re-query CCDS DB by Protein ID:ENSMUSP00000025208
Original member Current member NCBI NM_029669.4 NP_083945.1 Accepted alive Link to Nucleotide Sequence:NM_029669.4Link to Protein Sequence:NP_083945.1Re-query CCDS DB by Nucleotide ID:NM_029669Re-query CCDS DB by Protein ID:NP_083945Link to BLAST:NP_083945.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083945.1 357 Q9CZJ9 357 100% 0 0

Chromosomal Locations for CCDS 29148.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 35675119 35675243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35680766 35680938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35681920 35682029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35683218 35683324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35686668 35686853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35696978 35697123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35700804 35700990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35703026 35703065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGGCGACCACTCTGGGCAGCGGAGAGCGCTGGACCCAAGCTTACATTGATGCAATTAGAAGAAACAAAT
ACCCAGAAGACAAGCGGCCTGACAGCCATGATCCTTGCGGCTGCTGTAACTGCATGAAGGCGCAAAAGGA
AAAAAAGTCTGAGAATGAGTGGAATCAGACGCGGCAGGGAGAGGGGAACGCCACTTACACAGAGGAACAG
CTACGTGGGGTACAAAGAATCAAGAAGTGCAGAAATTACTATGACATCCTGGGTGTTTCTCACAATGCCA
GCGATGAAGAGCTTAAGAAAGCGTACAAGAAGCTTGCCCTGAAGTTTCACCCCGACAAGAACTGCGCTCC
TGGAGCAACAGAGGCCTTCAAAGCAATAGGAAATGCCTTTGCAGTCCTGAGCAATCCCGACAAGAGACTC
CGCTATGATGAATATGGAGATGAGCAGGTGACTTTCACTGTCCCTCGAGCCAGATCTTATCATTATTACA
AAGACTTTGAAGCTGACATCTCTCCAGAAGAATTATTTAATGTGTTCTTCGGAGGACATTTCCCTTCAGG
AAATATTCACATGTTCTCAAATGTGACAGACGACAGTCAGTATTATCGCCGGCGACACCGCCACGAGAGG
ACACAGACACATAAGAGAGAGGAAGACAAATCTCAGACTCCATATTCGGCATTTGTTCAGCTGCTTCCAG
TTCTGGTGATTGTGACTATTTCTGTCATTACTCAGCTGCTCGCTGCTAATCCCCCATATAGTCTGTTCTA
TAAATCGACCTTGGGCTATACCATTTCTAGAGAAACGCAGAACCTGCAGGTGCCTTACTTCGTGGATAAA
AACTTTGACAAGGCCTACCGAGGCGCTTCCCTTCGTGACCTGGAGAAGACAATAGAGAAAGACTACATTG
ATTACATCCAGACGAGTTGTTGGAAGGAGAAACAGCAAAAGTCGGAGCTGACCAATTTGGCGGGGTTATA
CAGAGATGAGCGACTGCGGCAGAAAGCAGAGTCACTGAAACTCGAAAACTGTGCAAAGCTTTCCAAGCTC
ATTGGCCTGCGCAGGGCCGGCTGA

Translation (357 aa):
MATTLGSGERWTQAYIDAIRRNKYPEDKRPDSHDPCGCCNCMKAQKEKKSENEWNQTRQGEGNATYTEEQ
LRGVQRIKKCRNYYDILGVSHNASDEELKKAYKKLALKFHPDKNCAPGATEAFKAIGNAFAVLSNPDKRL
RYDEYGDEQVTFTVPRARSYHYYKDFEADISPEELFNVFFGGHFPSGNIHMFSNVTDDSQYYRRRHRHER
TQTHKREEDKSQTPYSAFVQLLPVLVIVTISVITQLLAANPPYSLFYKSTLGYTISRETQNLQVPYFVDK
NFDKAYRGASLRDLEKTIEKDYIDYIQTSCWKEKQQKSELTNLAGLYRDERLRQKAESLKLENCAKLSKL
IGLRRAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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