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Report for CCDS14218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14218.1 Public Homo sapiens X IL1RAPL1 24 110 108 CCDS HistoryNCBI Gene:11141Re-query CCDS DB by CCDS ID:14218.1Re-query CCDS DB by GeneID:11141See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14218.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378993.6 ENSP00000368278.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378993.6Link to Ensembl Protein Viewer:ENSP00000368278.1Re-query CCDS DB by Nucleotide ID:ENST00000378993Re-query CCDS DB by Protein ID:ENSP00000368278
Original member Current member NCBI NM_014271.4 NP_055086.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014271.4Link to Protein Sequence:NP_055086.1Re-query CCDS DB by Nucleotide ID:NM_014271Re-query CCDS DB by Protein ID:NP_055086Link to BLAST:NP_055086.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055086.1 696 Q9NZN1-1 696 100% 0 0

Chromosomal Locations for CCDS 14218.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 28789344 28789425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 29282938 29283217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 29396258 29396444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 29399155 29399308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 29668430 29668504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 29917464 29917596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 29919949 29920094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 29941651 29941794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 29954522 29954692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 29955102 29955820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2091 nt):
ATGAAAGCTCCGATTCCACACTTGATTCTCTTATACGCTACTTTTACTCAGAGTTTGAAGGTTGTGACCA
AAAGAGGCTCCGCCGATGGATGCACTGACTGGTCTATCGATATCAAGAAATATCAAGTTTTGGTGGGAGA
GCCTGTTCGAATCAAATGTGCACTCTTTTATGGTTATATCAGAACAAATTACTCCCTTGCCCAAAGTGCT
GGACTCAGTTTGATGTGGTACAAAAGTTCTGGTCCTGGAGACTTTGAAGAGCCAATAGCCTTTGACGGAA
GTAGAATGAGCAAAGAAGAAGACTCCATTTGGTTCCGGCCAACATTGCTACAGGACAGTGGTCTCTACGC
CTGTGTCATCAGAAACTCCACTTACTGTATGAAAGTATCCATCTCACTGACAGTGGGTGAAAATGACACT
GGACTCTGCTATAATTCCAAGATGAAGTATTTTGAAAAAGCTGAACTTAGCAAAAGCAAGGAAATTTCAT
GCCGTGACATAGAGGATTTTCTACTGCCAACCAGAGAACCTGAAATCCTTTGGTACAAGGAATGCAGGAC
AAAAACATGGAGGCCAAGTATTGTATTCAAAAGAGATACTCTGCTTATAAGAGAAGTCAGAGAAGATGAC
ATTGGAAATTATACCTGTGAATTAAAATATGGAGGCTTTGTTGTGAGAAGAACTACTGAATTAACTGTTA
CAGCCCCTCTGACTGATAAGCCACCCAAGCTTTTGTATCCTATGGAAAGTAAACTGACAATTCAGGAGAC
CCAGCTGGGTGACTCTGCTAATCTAACCTGCAGAGCTTTCTTTGGGTACAGCGGAGATGTCAGTCCTTTA
ATTTACTGGATGAAAGGAGAAAAATTTATTGAAGATCTGGATGAAAATCGAGTTTGGGAAAGTGACATTA
GAATTCTTAAGGAGCATCTTGGGGAACAGGAAGTTTCCATCTCATTAATTGTGGACTCTGTGGAAGAAGG
TGACTTGGGAAATTACTCCTGTTATGTTGAAAATGGAAATGGACGTCGACACGCCAGCGTTCTCCTTCAT
AAACGAGAGCTAATGTACACAGTGGAACTTGCTGGAGGCCTTGGTGCTATACTCTTGCTGCTTGTATGTT
TGGTGACCATCTACAAGTGTTACAAGATAGAAATCATGCTCTTCTACAGGAATCATTTTGGAGCTGAAGA
GCTCGATGGAGACAATAAAGATTATGATGCATACTTATCATACACCAAAGTGGATCCTGACCAGTGGAAT
CAAGAGACTGGGGAAGAAGAACGTTTTGCCCTTGAAATCCTACCTGATATGCTTGAAAAGCATTATGGAT
ATAAGTTGTTTATACCAGATAGAGATTTAATCCCAACTGGAACATACATTGAAGATGTGGCAAGATGTGT
AGATCAAAGCAAGCGGCTGATTATTGTCATGACCCCAAATTACGTAGTTAGAAGGGGCTGGAGCATCTTT
GAGCTGGAAACCAGACTTCGAAATATGCTTGTGACTGGAGAAATTAAAGTGATTCTAATTGAATGCAGTG
AACTGAGAGGAATTATGAACTACCAGGAGGTGGAGGCCCTGAAGCACACCATCAAGCTCCTGACGGTCAT
TAAATGGCATGGACCAAAATGCAACAAGTTGAACTCCAAGTTCTGGAAACGTTTACAGTATGAAATGCCT
TTTAAGAGGATAGAACCCATTACACATGAGCAGGCTTTAGATGTCAGTGAGCAAGGGCCTTTTGGGGAGC
TGCAGACTGTCTCGGCCATTTCCATGGCCGCGGCCACCTCCACAGCTCTAGCCACTGCCCATCCAGATCT
CCGTTCTACCTTTCACAACACGTACCATTCACAAATGCGTCAGAAACACTACTACCGAAGCTATGAGTAC
GACGTACCTCCTACCGGCACCCTGCCTCTTACCTCCATAGGCAATCAGCATACCTACTGTAACATCCCTA
TGACACTCATCAACGGGCAGCGGCCACAGACAAAATCGAGCAGGGAGCAGAATCCAGATGAGGCCCACAC
AAACAGTGCCATCCTGCCGCTGTTGCCAAGGGAGACCAGTATATCCAGTGTGATATGGTGA

Translation (696 aa):
MKAPIPHLILLYATFTQSLKVVTKRGSADGCTDWSIDIKKYQVLVGEPVRIKCALFYGYIRTNYSLAQSA
GLSLMWYKSSGPGDFEEPIAFDGSRMSKEEDSIWFRPTLLQDSGLYACVIRNSTYCMKVSISLTVGENDT
GLCYNSKMKYFEKAELSKSKEISCRDIEDFLLPTREPEILWYKECRTKTWRPSIVFKRDTLLIREVREDD
IGNYTCELKYGGFVVRRTTELTVTAPLTDKPPKLLYPMESKLTIQETQLGDSANLTCRAFFGYSGDVSPL
IYWMKGEKFIEDLDENRVWESDIRILKEHLGEQEVSISLIVDSVEEGDLGNYSCYVENGNGRRHASVLLH
KRELMYTVELAGGLGAILLLLVCLVTIYKCYKIEIMLFYRNHFGAEELDGDNKDYDAYLSYTKVDPDQWN
QETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIF
ELETRLRNMLVTGEIKVILIECSELRGIMNYQEVEALKHTIKLLTVIKWHGPKCNKLNSKFWKRLQYEMP
FKRIEPITHEQALDVSEQGPFGELQTVSAISMAAATSTALATAHPDLRSTFHNTYHSQMRQKHYYRSYEY
DVPPTGTLPLTSIGNQHTYCNIPMTLINGQRPQTKSSREQNPDEAHTNSAILPLLPRETSISSVIW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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