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Report for CCDS24074.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24074.1 Public Mus musculus 10 Chst11 23 108 98 CCDS HistoryNCBI Gene:58250Re-query CCDS DB by CCDS ID:24074.1Re-query CCDS DB by GeneID:58250See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24074.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040110.7 ENSMUSP00000045349.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040110.7Link to Ensembl Protein Viewer:ENSMUSP00000045349.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040110Re-query CCDS DB by Protein ID:ENSMUSP00000045349
Original member NCBI NM_021439.2 NP_067414.2 Updated not alive Link to Nucleotide Sequence:NM_021439.2Link to Protein Sequence:NP_067414.2Re-query CCDS DB by Nucleotide ID:NM_021439Re-query CCDS DB by Protein ID:NP_067414
NCBI NM_021439.3 NP_067414.2 Updated not alive Link to Nucleotide Sequence:NM_021439.3Link to Protein Sequence:NP_067414.2Re-query CCDS DB by Nucleotide ID:NM_021439Re-query CCDS DB by Protein ID:NP_067414
Current member NCBI NM_021439.4 NP_067414.2 Accepted alive Link to Nucleotide Sequence:NM_021439.4Link to Protein Sequence:NP_067414.2Re-query CCDS DB by Nucleotide ID:NM_021439Re-query CCDS DB by Protein ID:NP_067414Link to BLAST:NP_067414.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067414.2 352 Q9JME2 352 100% 0 0

Chromosomal Locations for CCDS 24074.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 82985865 82985982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83092069 83092154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83190945 83191799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGAAGCCGGCGCTGCTGGAAGTGATGAGGATGAACAGAATTTGCCGGATGGTGCTGGCCACTTGCTTCG
GATCCTTTATCTTGGTCATCTTCTATTTCCAAAGTATGTTGCACCCAGTCATGCGGAGGAACCCCTTCGG
TGTGGACATCTGCTGCCGGAAGGGATCGAGAAGTCCCCTGCAGGAGCTCTACAATCCCATCCAGCTGGAG
CTATCCAACACTGCCATCCTGCACCAGATGAGACGGGACCAGGTGACAGACACCTGCCGGGCCAACAGTG
CCATGAGCCGCAAGCGCAGGGTGCTGACCCCCAACGACCTGAAGCACCTGGTGGTGGATGAGGACCACGA
ACTCATCTACTGCTATGTGCCCAAGGTAGCGTGCACCAACTGGAAGAGGCTCATGATGGTCCTGAGTGGC
CGGGGCAAGTACAGCGATCCCATGGAGATCCCAGCCAACGAAGCCCACGTGTCGGCCAACCTGAAGACCC
TTAACCAGTACAGCATCCCAGAGATCAACCACCGCTTGAAAAGCTACATGAAGTTCCTGTTCGTGCGGGA
ACCCTTCGAGAGGCTGGTGTCTGCCTACCGCAACAAGTTCACGCAGAAGTACAACACCTCCTTCCACAAG
CGCTACGGCACCAAGATCATCCGACGCCAGCGGAAGAACGCCACGCAGGAGGCCCTGCGCAAGGGGGACG
ATGTCAAGTTCGAGGAGTTCGTGGCCTACCTCATCGACCCCCACACCCAGCGGGAGGAGCCCTTCAACGA
GCACTGGCAGACGGTCTACTCTCTCTGCCACCCGTGCCACATCCACTACGACCTCGTGGGCAAGTATGAG
ACACTGGAGGAGGACTCCAATTACGTACTGCAGCTGGCCGGAGTGAGCGGCTACCTGAAGTTCCCCACCT
ATGCAAAGTCCACCCGAACTACCGACGAGATGACCACGGAGTTCTTCCAGAACATCAGCGCCGAGCACCA
GACACAGCTGTACGAAGTCTACAAACTGGACTTTTTAATGTTCAACTACTCAGTGCCAAACTACCTGAAG
TTGGATTAG

Translation (352 aa):
MKPALLEVMRMNRICRMVLATCFGSFILVIFYFQSMLHPVMRRNPFGVDICCRKGSRSPLQELYNPIQLE
LSNTAILHQMRRDQVTDTCRANSAMSRKRRVLTPNDLKHLVVDEDHELIYCYVPKVACTNWKRLMMVLSG
RGKYSDPMEIPANEAHVSANLKTLNQYSIPEINHRLKSYMKFLFVREPFERLVSAYRNKFTQKYNTSFHK
RYGTKIIRRQRKNATQEALRKGDDVKFEEFVAYLIDPHTQREEPFNEHWQTVYSLCHPCHIHYDLVGKYE
TLEEDSNYVLQLAGVSGYLKFPTYAKSTRTTDEMTTEFFQNISAEHQTQLYEVYKLDFLMFNYSVPNYLK
LD


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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