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Report for CCDS16661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16661.1 Public Mus musculus 2 Duoxa1 23 108 98 CCDS HistoryNCBI Gene:213696Re-query CCDS DB by CCDS ID:16661.1Re-query CCDS DB by GeneID:213696See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16661.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028653.13 ENSMUSP00000028653.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028653.13Link to Ensembl Protein Viewer:ENSMUSP00000028653.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028653Re-query CCDS DB by Protein ID:ENSMUSP00000028653
Original member Current member EBI ENSMUST00000110537.7 ENSMUSP00000106166.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110537.7Link to Ensembl Protein Viewer:ENSMUSP00000106166.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110537Re-query CCDS DB by Protein ID:ENSMUSP00000106166
Original member Current member NCBI NM_001305262.1 NP_001292191.1 Accepted alive Link to Nucleotide Sequence:NM_001305262.1Link to Protein Sequence:NP_001292191.1Re-query CCDS DB by Nucleotide ID:NM_001305262Re-query CCDS DB by Protein ID:NP_001292191Link to BLAST:NP_001292191.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292191.1 341 Q8VE49 341 100% 0 0

Chromosomal Locations for CCDS 16661.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 122303745 122303998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122304626 122304843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122305063 122305276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122305554 122305688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122306311 122306368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122306680 122306826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGGCTGCTCTTGGACACACACTGCCCTTCTACACTGGCACCAAGCCAACCTTTCCAATGGACACTACTC
TGGCTGTCATTATCACCATCTTCCTGACTGCACTGGTCACCTTCATCATTATCCTGCCTGGCATCCGTGG
GAAGACGAGGCTGTTCTGGCTGCTTCGGGTGGTGACCAGCTTATTCATCGGGGCTGTGATCCTGGCTGTG
AACTTCAGTTCTGAGTGGTCTGTGGGCCATGTCAACGCCAACACAACGTACAAAGCCTTCAGTCCCAAGT
GGGTCAGTGTGGACGTGGGACTGCAGATCGGGCTCGGCGGCGTCAACATCACCCTCACAGGCACCCCAGT
GCAGCAGCTGAATGAAACCATCAACTACAATGAGGCATTCGCATGGCGCCTGGGCAGGAGCTATGCAGAG
GAGTATGCAAAGGCCCTGGAGAAGGGCCTTCCAGACCCAGTGCTATACCTGGCTGAGAAGTTCACCCCTC
GAAGCCCATGTGGCCTGTACAACCAGTACCGCCTGGCAGGACACTATGCCTCTGCCATGCTGTGGGTGGC
ATTCCTCTGCTGGCTACTGGCCAATGTGATGTTGTCGATGCCAGTGCTGGTTTATGGTGGCCACATGCTG
CTGGCCACTGGTCTCTTCCAGCTGTTGGCCCTGTTCTTCTTCTCCATGACCACGTCACTCATATCGCCCT
GTCCCCTGCGCTTGGGCACTGCTGTGCTGCACACTCACCATGGGCCCGCTTTCTGGATCACGTTAGCCAC
AGGACTGCTGTGTATTCTGCTTGGCCTGGTCATGGCAGTGGCCCACAGGATGCAGCCTCACAGACTGAAG
GCTTTCTTCAACCAGAGTTCAGAGGACCCAGTGCTGGAGTGGGGCTCTGAAGAAGGAGGACTCTTGAGCC
CCCACTACCGGTCCATAGCTGAGAGTCCTGAGACCCAGGACATTCCCATGTCAGTGGCTTCCTCTGAGAC
ATGTTTTAAGGAGGAACACCCCAAAGAGTCCGACTGTTCCCTGTAA

Translation (341 aa):
MAALGHTLPFYTGTKPTFPMDTTLAVIITIFLTALVTFIIILPGIRGKTRLFWLLRVVTSLFIGAVILAV
NFSSEWSVGHVNANTTYKAFSPKWVSVDVGLQIGLGGVNITLTGTPVQQLNETINYNEAFAWRLGRSYAE
EYAKALEKGLPDPVLYLAEKFTPRSPCGLYNQYRLAGHYASAMLWVAFLCWLLANVMLSMPVLVYGGHML
LATGLFQLLALFFFSMTTSLISPCPLRLGTAVLHTHHGPAFWITLATGLLCILLGLVMAVAHRMQPHRLK
AFFNQSSEDPVLEWGSEEGGLLSPHYRSIAESPETQDIPMSVASSETCFKEEHPKESDCSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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