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Report for CCDS51645.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51645.1 Public Mus musculus 5 Il31 23 108 98 CCDS HistoryNCBI Gene:76399Re-query CCDS DB by CCDS ID:51645.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51645.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031389.11 ENSMUSP00000031389.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031389.11Link to Ensembl Protein Viewer:ENSMUSP00000031389.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031389Re-query CCDS DB by Protein ID:ENSMUSP00000031389
Original member NCBI NM_029594.1 NP_083870.1 Updated not alive Link to Nucleotide Sequence:NM_029594.1Link to Protein Sequence:NP_083870.1Re-query CCDS DB by Nucleotide ID:NM_029594Re-query CCDS DB by Protein ID:NP_083870
Current member NCBI NM_029594.2 NP_083870.1 Accepted alive Link to Nucleotide Sequence:NM_029594.2Link to Protein Sequence:NP_083870.1Re-query CCDS DB by Nucleotide ID:NM_029594Re-query CCDS DB by Protein ID:NP_083870Link to BLAST:NP_083870.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083870.1 163 Q6EAL8 163 100% 0 0

Chromosomal Locations for CCDS 51645.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123480419 123480742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123481702 123481853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123482034 123482049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGATCTTCCACACAGGAACAACGAAGCCTACCCTGGTGCTGCTTTGCTGTATAGGAACCTGGCTGGCCA
CCTGCAGCTTGTCCTTCGGTGCCCCAATATCGAAGGAAGACTTAAGAACTACAATTGACCTCTTGAAACA
AGAGTCTCAGGATCTTTATAACAACTATAGCATAAAGCAGGCATCTGGGATGTCAGCAGACGAATCAATA
CAGCTGCCGTGTTTCAGCCTGGACCGGGAAGCATTAACCAACATCTCGGTCATCATAGCACATCTGGAGA
AAGTCAAAGTGTTGAGCGAGAACACAGTAGATACTTCTTGGGTGATAAGATGGCTAACAAACATCAGCTG
TTTCAACCCACTGAATTTAAACATTTCTGTGCCTGGAAATACTGATGAATCCTATGATTGTAAAGTGTTC
GTGCTTACGGTTTTAAAGCAGTTCTCAAACTGCATGGCAGAACTGCAGGCTAAGGACAATACTACATGCT
GA

Translation (163 aa):
MIFHTGTTKPTLVLLCCIGTWLATCSLSFGAPISKEDLRTTIDLLKQESQDLYNNYSIKQASGMSADESI
QLPCFSLDREALTNISVIIAHLEKVKVLSENTVDTSWVIRWLTNISCFNPLNLNISVPGNTDESYDCKVF
VLTVLKQFSNCMAELQAKDNTTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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