NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21375.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21375.1 Public Mus musculus 7 Det1 23 108 98 CCDS HistoryNCBI Gene:76375Re-query CCDS DB by CCDS ID:21375.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21375.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032839.12 ENSMUSP00000032839.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032839.12Link to Ensembl Protein Viewer:ENSMUSP00000032839.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032839Re-query CCDS DB by Protein ID:ENSMUSP00000032839
Original member NCBI NM_029585.3 NP_083861.1 Updated not alive Link to Nucleotide Sequence:NM_029585.3Link to Protein Sequence:NP_083861.1Re-query CCDS DB by Nucleotide ID:NM_029585Re-query CCDS DB by Protein ID:NP_083861
Current member NCBI NM_029585.4 NP_083861.1 Accepted alive Link to Nucleotide Sequence:NM_029585.4Link to Protein Sequence:NP_083861.1Re-query CCDS DB by Nucleotide ID:NM_029585Re-query CCDS DB by Protein ID:NP_083861Link to BLAST:NP_083861.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083861.1 550 Q9D0A0 550 100% 0 0

Chromosomal Locations for CCDS 21375.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 78827923 78828112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78834111 78834302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78840005 78840192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78843172 78844254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGGATCATCATGTTTCCACAATTAAACCTCGAAGAATCCAAAATCAAAATGTCATTCACCGCCTCGAAC
GCCGGCGCATCAGTTCAGGCAAGGCGGGCACCCACTGGCATCAGGTCCGAGTGTTCCACCAGAACGTCTT
CCCCAACTTCACGGTTGTCAACGTCGAAAAGCCTCCTTGTTTCTTACGGAAATTCTCGCCTGACGGGCGC
TACTTTATTGCCTTTTCATCTGACCAGACATCTCTTGAAATCTATGAGTACCAGGGCTGTCAGGCAGCAG
AGGACCTCTTGCAGGGATACGAAGGGGAGATCTTGTCCAATGGCAATGACCAGAGGTCGGTCAGCATCCG
AGGTCGGCTCTTTGAGCGTTTTTTTGTTCTGCTGCACATTACCAACGTGGCGGCCAATGGCGAGCACTTG
AACCGGGAGTGTAGCCTCTTCACAGATGACTGCCGCTGCGTCATCGTGGGCTCTGCTGCCTACCTCCCAG
ACGAGCCTCACCCTCCATTCTATGAGGTGTATCGGAACAGTGAGTCGGTGACCCCCAATCCACGGTCCCC
ACTTGAGGACTATTCCCTCCACATCATTGACCTTCACACTGGCCGTTTGTGTGACACACGCACATTCAAG
TGTGACAAAGTGGTCTTGTCGCACAATCAAGGGCTCTACTTGTATAAAAACATCCTGGCCATATTGTCTG
TGCAGCAGCAGACGATTCATGTCTTCCAGGTGACCCCTGAAGGCACCTTTATCGACGTTCGAACCATCGG
CCGCTTCTGCTATGAGGATGACCTGCTCACTGTGTCTGCCGTTTTCCCTGAGGTGCAGCGGGACAGCCAG
ACAGGCATGGCCAACCCTTTCAGGGACCCTTTCATCAACTCCTTGAAGCACCGCTTGCTGGTTTACCTCT
GGCGCCGGGCAGAGCAGGATGGCAGTGCCATGGCGAAGAGGCGGTTCTTCCAGTACTTTGACCAGCTGCG
CCAGCTGCGCATGTGGAAGATGCAGCTCCTGGACGAGAACCATCTGTTCATCAAGTACACCAGCGAGGAC
GTAGTGACGCTGCGGGTCACAGACCCGTCTCAGGCCTCCTTCTTTGTGGTATACAACATGGTGACAACAG
AGGTGATTGCCGTGTTTGAGAACACATCCGATGAGCTTCTGGAACTCTTCGAGAACTTCTGTGACCTCTT
CCGCAACGCCACCCTGCACAGTGAAGTCCAATTCCCTTGCTCAGCTTCTAGCAACAACTTTGCAAGGCAG
ATCCAGCGCCGGTTCAAAGACACGATTATAAATGCCAAGTATGGAGGGCACACGGAGGCTGTGCGCCGAC
TGCTAGGCCAGCTCCCCATCAGTGCCCAGTCTTACAGTGGGAGCCCATACCTGGATTTGTCTCTCTTCAG
CTACGATGACAAGTGGGTGTCAGTCATGGAGCGACCCAAGACTTGTGGAGATCACCCGATCAGGTTCTAT
GCCCGGGACTCTGGCTTGCTGAAGTTTGAGATCCAGGCGGGCTTGCTGGGCCGCCCCATCAACCACACAG
TGCGACGCCTCGTGGCCTTCACCTTTCACCCCTTTGAGCCATTTGCCATTTCTGTGCAGAGGACTAACGC
AGAGTATGTTGTCAACTTCCACATGCGACACTGCTGCACCTAG

Translation (550 aa):
MDHHVSTIKPRRIQNQNVIHRLERRRISSGKAGTHWHQVRVFHQNVFPNFTVVNVEKPPCFLRKFSPDGR
YFIAFSSDQTSLEIYEYQGCQAAEDLLQGYEGEILSNGNDQRSVSIRGRLFERFFVLLHITNVAANGEHL
NRECSLFTDDCRCVIVGSAAYLPDEPHPPFYEVYRNSESVTPNPRSPLEDYSLHIIDLHTGRLCDTRTFK
CDKVVLSHNQGLYLYKNILAILSVQQQTIHVFQVTPEGTFIDVRTIGRFCYEDDLLTVSAVFPEVQRDSQ
TGMANPFRDPFINSLKHRLLVYLWRRAEQDGSAMAKRRFFQYFDQLRQLRMWKMQLLDENHLFIKYTSED
VVTLRVTDPSQASFFVVYNMVTTEVIAVFENTSDELLELFENFCDLFRNATLHSEVQFPCSASSNNFARQ
IQRRFKDTIINAKYGGHTEAVRRLLGQLPISAQSYSGSPYLDLSLFSYDDKWVSVMERPKTCGDHPIRFY
ARDSGLLKFEIQAGLLGRPINHTVRRLVAFTFHPFEPFAISVQRTNAEYVVNFHMRHCCT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH