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Report for CCDS36772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36772.1 Public Mus musculus 13 Nln 23 108 98 CCDS HistoryNCBI Gene:75805Re-query CCDS DB by CCDS ID:36772.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36772.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109315.4 ENSMUSP00000104938.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109315.4Link to Ensembl Protein Viewer:ENSMUSP00000104938.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109315Re-query CCDS DB by Protein ID:ENSMUSP00000104938
Original member Current member NCBI NM_029447.2 NP_083723.1 Accepted alive Link to Nucleotide Sequence:NM_029447.2Link to Protein Sequence:NP_083723.1Re-query CCDS DB by Nucleotide ID:NM_029447Re-query CCDS DB by Protein ID:NP_083723Link to BLAST:NP_083723.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083723.1 704 Q91YP2 704 100% 0 0

Chromosomal Locations for CCDS 36772.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 104024946 104025080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104035587 104035723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104036854 104036982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104037298 104037484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104046189 104046390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104050495 104050861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104052504 104052639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104058741 104058901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104059467 104059569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104061745 104061852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104069195 104069343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104072763 104073022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104109416 104109456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2115 nt):
ATGATCACCCTGTGCCTTTCGGCTCTGCGAGGCCTCCACAGAGCTGGTGGTTCCAGGATTCGGCTCAGAA
TGACGTTGGGGAGGGAGGCGGCATCTCCTCTTCAGGCCATGTCTTCCTACACCGCCGCAGGCAGGAATGT
TCTCAGATGGGACCTTTCTCCAGAGCAGATCAGGACGAGGACAGAGGAGCTCATAGCACAGACCAAGCAG
GTGTATGATACCGTGGGGACAATCAACCTGGAGGATGTAACTTACGAGAACTGTCTGCAGGTGCTGGCTG
ACATAGAAGTGAAGTACATAGTGGAAAGGACCATGCTGGACTTCCCTCAGCACGTGTCGTCTGACAGAGA
AGTGCGGGCTGCAAGCACAGAAGCGGACAAAAGGCTTTCTCGTTTTGATATTGAGATGAGCATGAGAGAA
GATGTATTTCAGAGAATTGTTCATTTACAAGAAACGTGCGATTTGGAGAAGATAAAGCCTGAGGCCAGGC
GATACTTGGAAAAATCAATTAAAATGGGGAAAAGGAATGGACTCCATCTTCCAGAACACGTAAAAAATGA
AATCAAATCAATGAAGAAGAGAATGAGTGAGCTATGCATTGACTTCAACAAAAACCTCAATGAGGATGAC
ACGTCCCTTGTATTTTCCAAGGCTGAACTTGGTGCTCTTCCCGACGACTTCATTGACAGTTTAGAAAAAA
CAGATGAAGACAAGTACAAAGTTACCTTAAAGTATCCCCACTATTTTCCTGTCATGAAGAAATGCTGTGT
CCCTGAAACTCGAAGGAAGATGGAAATGGCTTTTCATACCAGGTGCAAAGAGGAAAACACCATAATTCTG
CAACAGCTCCTGCCGCTGCGAGCACAAGTGGCCAAACTGCTCGGCTACAACACCCATGCTGACTTTGTCC
TTGAACTGAACACTGCAAAGAGCACAAGCCATGTGGCAACCTTTCTAGATGATTTAAGCCAGAAATTAAA
ACCCTTGGGTGAGGCTGAACGGGAGTTTATTTTGAGCTTGAAGAAGAAGGAATGCGAAGAGCGAGGTTTT
GCATACGACGGGAAGATCAACGCATGGGACCTCCATTACTACATGACCCAGACAGAGGAGCTCAAGTACT
CTGTGGACCAGGAGTCCCTCAAGGAGTACTTTCCCATTGAGGTGGTCACTGAAGGCCTGCTAAGCATCTA
CCAGGAGCTGTTGGGACTTTCATTTGAACAAGTGGCTGATGCCCATGTTTGGAATAAGAGTGTTTCACTT
TACACCGTGAAGGATAAAGCTACTGGAGAAGTGCTGGGGCAGTTCTACCTGGACCTCTATCCAAGGGAAG
GAAAATACAACCATGCGGCCTGCTTTGGTCTCCAGCCAGGCTGCCTTCTCCCTGATGGCAGTCGGATGAT
GTCTGTGGCTGCCCTGGTGGTCAACTTCTCTCAGCCCATAGCAGGCCGGCCCTCTCTCCTGAGACACGAC
GAAGTGCGAACTTACTTCCATGAGTTTGGTCACGTCATGCATCAGATCTGTGCACAGACTGACTTTGCAC
GATTTAGTGGAACAAATGTGGAAACTGACTTTGTAGAGGTGCCATCACAAATGCTTGAAAACTGGGTGTG
GGACATTGACTCCCTGCGAAAACTGTCAAAACATTATAGAGACGGACACCCTATCACAGACGAGCTGCTG
GAGAAGCTTGTGGCTTCGAGACTGGTCAACACAGGTCTTCTGACGCTTCGCCAAATTGTTTTGAGCAAAG
TTGACCAGTCCCTCCATACCAATGCGTCGCTGGATGCCGCGAGCGAATACGCTAAATACTGCACAGAAAT
TTTGGGAGTTGCAGCTACGCCAGGCACAAATATGCCAGCTACCTTTGGACATTTGGCAGGAGGGTATGAC
GGCCAGTATTATGGATATCTTTGGAGTGAAGTCTTTTCCATGGACATGTTTCACAGCTGTTTCAGAAAAG
AAGGGATTATGAATCCAGAGGTTGGAATGAAATACAGAAACCTAATCCTGAAGCCTGGGGGGTCCCTGGA
CGGCATGGACATGCTCCAGAATTTCTTGCAACGTGAGCCAAACCAGAAAGCATTCCTGATGAGTCGAGGC
CTGAATGCTTCGTAA

Translation (704 aa):
MITLCLSALRGLHRAGGSRIRLRMTLGREAASPLQAMSSYTAAGRNVLRWDLSPEQIRTRTEELIAQTKQ
VYDTVGTINLEDVTYENCLQVLADIEVKYIVERTMLDFPQHVSSDREVRAASTEADKRLSRFDIEMSMRE
DVFQRIVHLQETCDLEKIKPEARRYLEKSIKMGKRNGLHLPEHVKNEIKSMKKRMSELCIDFNKNLNEDD
TSLVFSKAELGALPDDFIDSLEKTDEDKYKVTLKYPHYFPVMKKCCVPETRRKMEMAFHTRCKEENTIIL
QQLLPLRAQVAKLLGYNTHADFVLELNTAKSTSHVATFLDDLSQKLKPLGEAEREFILSLKKKECEERGF
AYDGKINAWDLHYYMTQTEELKYSVDQESLKEYFPIEVVTEGLLSIYQELLGLSFEQVADAHVWNKSVSL
YTVKDKATGEVLGQFYLDLYPREGKYNHAACFGLQPGCLLPDGSRMMSVAALVVNFSQPIAGRPSLLRHD
EVRTYFHEFGHVMHQICAQTDFARFSGTNVETDFVEVPSQMLENWVWDIDSLRKLSKHYRDGHPITDELL
EKLVASRLVNTGLLTLRQIVLSKVDQSLHTNASLDAASEYAKYCTEILGVAATPGTNMPATFGHLAGGYD
GQYYGYLWSEVFSMDMFHSCFRKEGIMNPEVGMKYRNLILKPGGSLDGMDMLQNFLQREPNQKAFLMSRG
LNAS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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