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Report for CCDS19776.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19776.1 Public Mus musculus 5 Tsc22d4 23 108 98 CCDS HistoryNCBI Gene:78829Re-query CCDS DB by CCDS ID:19776.1Re-query CCDS DB by GeneID:78829See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19776.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100539.9 ENSMUSP00000098107.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100539.9Link to Ensembl Protein Viewer:ENSMUSP00000098107.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100539Re-query CCDS DB by Protein ID:ENSMUSP00000098107
Original member NCBI NM_023910.6 NP_076399.4 Updated not alive Link to Nucleotide Sequence:NM_023910.6Link to Protein Sequence:NP_076399.4Re-query CCDS DB by Nucleotide ID:NM_023910Re-query CCDS DB by Protein ID:NP_076399
Current member NCBI NM_023910.7 NP_076399.4 Accepted alive Link to Nucleotide Sequence:NM_023910.7Link to Protein Sequence:NP_076399.4Re-query CCDS DB by Nucleotide ID:NM_023910Re-query CCDS DB by Protein ID:NP_076399Link to BLAST:NP_076399.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076399.4 387 Q9EQN3 387 100% 0 0

Chromosomal Locations for CCDS 19776.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137747116 137747859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137751208 137751368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137758684 137758732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137759067 137759276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGAGTGGTGGTAAGAAGAAAAGTAGTTTTCAGATCACCAGCGTCACCACGGACTATGAGGGCCCAGGAA
GCCCAGGGGCTTCGGATTCCCCTGTCCCACCGGCTCTCGCTGGGCCCCCGCCCCGCCTCCCCAATGGGGA
CCCCAACCCTGATCCAGGGGGCAGGGGCACCCCCCGGAATGGCTCTCCGCCACCTGGAGCCCCTGCCTCC
CGTTTCCGGGTGGTGAAGCTGCCCCAAGGTTTGGGAGAGCCTTATCGTCGAGGTCGGTGGACGTGTGTGG
ATGTTTACGAGAGAGATCTGGAGCCTCCAAGCTTCGGTCGGCTTCTGGAGGGCATTCGAGGGGCCTCTGG
AGGCACCGGAGGCAGATCATTGGATTCTAGGTTGGAGCTGGCTAGTTTGGGCATAAGCACCCCTATCCCG
CAGCCAGGCCTGTCTCAGGGCCCCACCTCTTGGCTCCGCCCGCCCCCTACTTCTCCTGGACCACAGGCCC
GCTCCTTCACAGGGGGGCTGGGCCAGCTGGCAGGACCTGGCAAGGCTAAGGTGGAGACACCCCCGCTGTC
AGCATCTCCACCCCAGCAGCGCCCCCCAGGGCCTGGGACTGGAGATAGTGCTCAGACCCTGCCCTCTCTG
AGGGTAGAAGTGGAGTCTGGGGGTTCAGCAGCCGCAACCCCTCCACTGTCACGGAGAAGAGATGGAGCAG
TTCGGCTGAGGATGGAGTTAGTTGCTCCAGCGGAGACAGGAAAGGTACCTCCCACCGACTCTCGCCCCAA
CTCCCCAGCCCTCTACTTCGATGCCAGCCTGGTCCATAAGTCTCCAGACCCATTTGGAGCCGCAGCAGCC
CAGAGCCTCAGCCTGGCCCGTTCCATGTTGGCTATCAGCGGTCACCTGGACAGCGATGACGATAGTGGTT
CCGGAAGCCTGGTTGGCATTGACAACAAGATTGAACAAGCCATGGACTTGGTGAAGTCCCACCTCATGTT
TGCCGTGCGAGAAGAGGTGGAGGTGCTGAAGGAGCAGATCCGAGACCTGGCAGAGCGGAACGCTGCATTG
GAGCAGGAGAATGGATTGCTGCGCGCCCTGGCCAGCCCGGAGCAGCTGGCCCAGCTGCCATCCTCGGGGC
TCCCCAGGCTCGGGCCCTCTGCACCCAATGGGCCCTCCATCTGA

Translation (387 aa):
MSGGKKKSSFQITSVTTDYEGPGSPGASDSPVPPALAGPPPRLPNGDPNPDPGGRGTPRNGSPPPGAPAS
RFRVVKLPQGLGEPYRRGRWTCVDVYERDLEPPSFGRLLEGIRGASGGTGGRSLDSRLELASLGISTPIP
QPGLSQGPTSWLRPPPTSPGPQARSFTGGLGQLAGPGKAKVETPPLSASPPQQRPPGPGTGDSAQTLPSL
RVEVESGGSAAATPPLSRRRDGAVRLRMELVAPAETGKVPPTDSRPNSPALYFDASLVHKSPDPFGAAAA
QSLSLARSMLAISGHLDSDDDSGSGSLVGIDNKIEQAMDLVKSHLMFAVREEVEVLKEQIRDLAERNAAL
EQENGLLRALASPEQLAQLPSSGLPRLGPSAPNGPSI


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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