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Report for CCDS48249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48249.1 Public Mus musculus 1 Tex30 23 108 98 CCDS HistoryNCBI Gene:75623Re-query CCDS DB by CCDS ID:48249.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48249.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027215.11 ENSMUSP00000027215.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027215.11Link to Ensembl Protein Viewer:ENSMUSP00000027215.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027215Re-query CCDS DB by Protein ID:ENSMUSP00000027215
Original member Current member EBI ENSMUST00000147571.7 ENSMUSP00000114624.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147571.7Link to Ensembl Protein Viewer:ENSMUSP00000114624.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000147571Re-query CCDS DB by Protein ID:ENSMUSP00000114624
Original member Current member EBI ENSMUST00000152239.7 ENSMUSP00000114991.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000152239.7Link to Ensembl Protein Viewer:ENSMUSP00000114991.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000152239Re-query CCDS DB by Protein ID:ENSMUSP00000114991
Original member Current member EBI ENSMUST00000133677.7 ENSMUSP00000115068.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000133677.7Link to Ensembl Protein Viewer:ENSMUSP00000115068.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000133677Re-query CCDS DB by Protein ID:ENSMUSP00000115068
Original member Current member EBI ENSMUST00000128190.7 ENSMUSP00000117565.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128190.7Link to Ensembl Protein Viewer:ENSMUSP00000117565.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000128190Re-query CCDS DB by Protein ID:ENSMUSP00000117565
Original member Current member EBI ENSMUST00000150911.7 ENSMUSP00000120928.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150911.7Link to Ensembl Protein Viewer:ENSMUSP00000120928.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150911Re-query CCDS DB by Protein ID:ENSMUSP00000120928
Original member Current member EBI ENSMUST00000156392.7 ENSMUSP00000121035.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156392.7Link to Ensembl Protein Viewer:ENSMUSP00000121035.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156392Re-query CCDS DB by Protein ID:ENSMUSP00000121035
Original member Current member NCBI NM_001356296.1 NP_001343225.1 Accepted alive Link to Nucleotide Sequence:NM_001356296.1Link to Protein Sequence:NP_001343225.1Re-query CCDS DB by Nucleotide ID:NM_001356296Re-query CCDS DB by Protein ID:NP_001343225Link to BLAST:NP_001343225.1
Original member Current member NCBI NM_001356297.1 NP_001343226.1 Accepted alive Link to Nucleotide Sequence:NM_001356297.1Link to Protein Sequence:NP_001343226.1Re-query CCDS DB by Nucleotide ID:NM_001356297Re-query CCDS DB by Protein ID:NP_001343226Link to BLAST:NP_001343226.1
Original member Current member NCBI NM_029368.2 NP_083644.1 Accepted alive Link to Nucleotide Sequence:NM_029368.2Link to Protein Sequence:NP_083644.1Re-query CCDS DB by Nucleotide ID:NM_029368Re-query CCDS DB by Protein ID:NP_083644Link to BLAST:NP_083644.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343225.1 225 Q3TUU5 225 100% 0 0
NP_001343226.1 225 Q3TUU5 225 100% 0 0
NP_083644.1 225 Q3TUU5 225 100% 0 0

Chromosomal Locations for CCDS 48249.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 44086890 44087063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44087843 44088048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44088476 44088527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44091361 44091591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44099848 44099862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGAGTCATACAGAGGTTAAATTAAAAATACCTTTTGGAAATAAATTACTGGATGCCGTTTGTTTGGTAC
CTAACAAGAACATAGCATATGGAATAATTCTTACACATGGAGCATCAGGAGACATGAATCTTCCTCATCT
GATGTCACTGGCATCCCACCTTGCATCTCATGGGTTTTTTTGCCTGAGATTTACTTGCAAAGGCCTTAAT
ATTGTACATAGAATTAAGGCATATAAAGCAGTTTTGAATTACCTGAAGACCTCAGGAGAATACAAACTTG
CTGGTGTTTTTCTTGGAGGTCGTTCAATGGGCTCAAGGGCAGCTGCTTCTGTGATGTGTCATACTGAGCC
AGATGATGCTGATGATTTTGTTCGAGGTCTCATTTGTATTTCTTACCCACTGCACCATCCAAAGCAGCAG
CATAAACTCAGAGACGAAGATCTCTTTCGTATAAAGGATCCTGTACTGTTTGTGTCGGGCTCAGCAGATG
AAATGTGTGAAAAGAACTTGTTGGAGAAAGTAGCACAGAAAATGCAAGCCCCTAGTAAAATTCATTGGAT
TGAAAAGGCAAATCATTCCATGGCAGTGAAAGGACGGTCTACAAATGATGTATTCAAAGAAATAAACACA
CAGATCTTGTTTTGGATCCAAGAAATCACTGAAATGGACAAGAAATAA

Translation (225 aa):
MSHTEVKLKIPFGNKLLDAVCLVPNKNIAYGIILTHGASGDMNLPHLMSLASHLASHGFFCLRFTCKGLN
IVHRIKAYKAVLNYLKTSGEYKLAGVFLGGRSMGSRAAASVMCHTEPDDADDFVRGLICISYPLHHPKQQ
HKLRDEDLFRIKDPVLFVSGSADEMCEKNLLEKVAQKMQAPSKIHWIEKANHSMAVKGRSTNDVFKEINT
QILFWIQEITEMDKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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