NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38681.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38681.1 Public Mus musculus 3 Fpgt 23 108 98 CCDS HistoryNCBI Gene:75540Re-query CCDS DB by CCDS ID:38681.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38681.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066568.5 ENSMUSP00000068939.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066568.5Link to Ensembl Protein Viewer:ENSMUSP00000068939.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000066568Re-query CCDS DB by Protein ID:ENSMUSP00000068939
Original member Current member NCBI NM_029330.2 NP_083606.2 Accepted alive Link to Nucleotide Sequence:NM_029330.2Link to Protein Sequence:NP_083606.2Re-query CCDS DB by Nucleotide ID:NM_029330Re-query CCDS DB by Protein ID:NP_083606Link to BLAST:NP_083606.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083606.2 590 G5E8F4 590 100% 0 0

Chromosomal Locations for CCDS 38681.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 155086616 155088069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155090112 155090204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155091391 155091558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155093299 155093356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGGCGTCTCTCCGCGAAGCCACCCTGCGGAAACTGCGCAGATTTTCTGAGCTGAGAGGCAAACCCGTGG
CAGCTGGAGAATTCTGGGATGTGGTTGCAATAACAGCAGCTGATGAAAAGCAGGAGCTCGCTTACAAGCA
ACAGTTGTCCGAGAAGCTGAAGAAAAGGGAATTGCCTCTTGGAGTTCAATACCATGTTTTTCCAGATCCT
GCTGGGACCAAAATTGGAAATGGAGGATCAACACTTTGTTCCCTTGAGTGTTTGGAAAGCCTCTGTGGAG
ACAAATGGAATTCTCTGAAGGTCCTGCTAATCCACTCTGGTGGCTACAGCCAACGCCTTCCCAATGCGAG
TGCTTTAGGAAAGATCTTCACAGCCTTACCACTTGGTGAACCCATTTATCAGATGTTGGAGTTAAAACTA
GCCATGTACGTGGATTTCCCCTCAAACATGAGGCCTGGAGTCTTGGTCACCTGTGCAGATGATATCGAAC
TCTACAGTGTTGGGGACAGTGAGTACATTGCCTTTGACCAGCCTGGCTTTACTGCCTTAGCCCATCCGTC
TAGTCTGGCTGTAGGCACTACTCATGGAGTATTTGTCTTGCACTCTGACAGTTCCTTACAACATGGTGAC
CTTGAGTACAGGCAATGCTACCAATTCCTCCACAAGCCCACCATTGAAAACATGCACCGCTTTAATGCTG
TGCATAGACAACGAAGCTTTGGTCAACAGAACTTGTCTGGAGGTGACACTGACTGTCTTCCATTGCACAC
TGAGTATGTCTACACAGATAGCCTGTTTTACATGGATCACAAATCAGCCAAAAAGTTACTTGATTTCTAT
AAAAGTGAAGGCCCACTGAACTGTGAAATAGATGCCTATGGAGACTTTCTTCAGGCACTGGGGCCTGGAG
CAACTGCAGAGTACACCAGGAACACATCTCATGTCACTAAAGAAGAGTCCCAGTTGTTGGACATGAGGCA
GAAAATATTCCACCTCCTCAAGGGAACACCACTGAATGTTGTTGTTCTTAATAACTCCAGATTTTATCAC
ATTGGAACACTGCAAGAGTATCTGCTTCATTTCACCTCTGATAGTGCATTAAAGACGGAGCTGGGCTTAC
AATCCATAGCTTTCAGTGTCTCTCCAAGTGTTCCTGAGCGCTCCAGTGGAACAGCCTGTGTCATTCACAG
TATAGTGGATTCAGGATGCTGTGTGGCCCCTGGCTCAGTGGTAGAGTATTCTAGATTGGGGCCTGAGGTG
TCCATCGGGGAAAACTGCATTATCAGCAGTTCTGTCATAGCAAAAACTGTTGTGCCAGCATATTCTTTTT
TGTGTTCTTTAAGTGTGAAGATAAATGGACACTTAAAATATTCTACTATGGTGTTTGGCATGCAAGACAA
CTTGAAGAACAGTGTTAAAACACTGGAAGACATAAAGGCACTTCAGTTCTTTGGAGTCTGTTTTCTGTCT
TGTTTAGACATTTGGAATCTTAAAGCTACAGAGAAACTATTCTCTGGAAATAAGATGAATCTGAGCCTGT
GGACTGCATGCATTTTCCCTGTCTGTTCATCTCTGAGTGAGTCGGCTACAGCATCCCTTGGGATGTTAAG
CGCTGTAAGGAACCATTCACCATTCAACCTAAGTGACTTTAACCTTTTGTCCATCCAGGAAATGCTTGTC
TACAAAGATGTACAAGACATGCTAGCTTATAGGGAACACATTTTTCTAGAAATTAGTTCAAATAAAAATC
AATCTGATTTAGAGAAATCTTGA

Translation (590 aa):
MASLREATLRKLRRFSELRGKPVAAGEFWDVVAITAADEKQELAYKQQLSEKLKKRELPLGVQYHVFPDP
AGTKIGNGGSTLCSLECLESLCGDKWNSLKVLLIHSGGYSQRLPNASALGKIFTALPLGEPIYQMLELKL
AMYVDFPSNMRPGVLVTCADDIELYSVGDSEYIAFDQPGFTALAHPSSLAVGTTHGVFVLHSDSSLQHGD
LEYRQCYQFLHKPTIENMHRFNAVHRQRSFGQQNLSGGDTDCLPLHTEYVYTDSLFYMDHKSAKKLLDFY
KSEGPLNCEIDAYGDFLQALGPGATAEYTRNTSHVTKEESQLLDMRQKIFHLLKGTPLNVVVLNNSRFYH
IGTLQEYLLHFTSDSALKTELGLQSIAFSVSPSVPERSSGTACVIHSIVDSGCCVAPGSVVEYSRLGPEV
SIGENCIISSSVIAKTVVPAYSFLCSLSVKINGHLKYSTMVFGMQDNLKNSVKTLEDIKALQFFGVCFLS
CLDIWNLKATEKLFSGNKMNLSLWTACIFPVCSSLSESATASLGMLSAVRNHSPFNLSDFNLLSIQEMLV
YKDVQDMLAYREHIFLEISSNKNQSDLEKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH