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Report for CCDS3136.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3136.1 Public Homo sapiens 3 ZIC1 24 110 108 CCDS HistoryNCBI Gene:7545Re-query CCDS DB by CCDS ID:3136.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3136.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282928.5 ENSP00000282928.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000282928.5Link to Ensembl Protein Viewer:ENSP00000282928.4Re-query CCDS DB by Nucleotide ID:ENST00000282928Re-query CCDS DB by Protein ID:ENSP00000282928
Original member Current member NCBI NM_003412.4 NP_003403.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003412.4Link to Protein Sequence:NP_003403.2Re-query CCDS DB by Nucleotide ID:NM_003412Re-query CCDS DB by Protein ID:NP_003403Link to BLAST:NP_003403.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003403.2 447 Q15915 447 100% 0 0

Chromosomal Locations for CCDS 3136.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 147410113 147411094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 147412518 147412681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 147413354 147413551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGCTCCTGGACGCCGGCCCCCAGTACCCAGCGATCGGCGTGACCACCTTTGGCGCGTCCCGCCACCACT
CCGCGGGCGACGTGGCCGAACGAGACGTGGGCCTGGGCATCAACCCGTTCGCCGACGGCATGGGCGCCTT
CAAGCTCAACCCCAGTTCGCACGAGCTGGCTTCGGCCGGCCAGACGGCCTTCACGTCGCAGGCGCCAGGC
TACGCGGCTGCTGCGGCCCTGGGCCATCACCATCACCCGGGCCACGTCGGCTCCTATTCCAGCGCAGCCT
TCAACTCCACGCGGGACTTTCTGTTCCGCAACCGGGGTTTTGGCGACGCGGCGGCGGCAGCCAGCGCACA
GCACAGCCTCTTTGCTGCATCGGCCGGGGGCTTCGGGGGCCCACACGGCCACACGGACGCCGCGGGCCAC
CTCCTCTTCCCCGGGCTTCACGAGCAGGCTGCCGGCCACGCGTCGCCTAACGTGGTCAACGGGCAGATGA
GGCTCGGCTTCTCGGGGGACATGTACCCGCGACCGGAGCAGTACGGCCAGGTGACCAGCCCGCGTTCGGA
GCACTATGCTGCGCCGCAGCTGCACGGCTACGGGCCCATGAACGTGAACATGGCCGCGCATCACGGCGCC
GGCGCCTTCTTCCGCTACATGCGCCAACCCATCAAGCAAGAGCTCATCTGCAAGTGGATCGAGCCCGAGC
AGCTGGCCAACCCCAAAAAGTCGTGCAACAAAACTTTCAGCACCATGCACGAGCTAGTTACGCACGTCAC
CGTGGAGCACGTAGGTGGCCCGGAGCAGAGTAATCACATCTGCTTCTGGGAGGAGTGTCCGCGCGAGGGC
AAGCCCTTCAAAGCCAAATACAAACTGGTTAACCACATCCGCGTGCACACGGGCGAGAAGCCCTTTCCCT
GCCCCTTCCCTGGCTGTGGCAAGGTCTTCGCGCGCTCCGAGAATTTAAAGATCCACAAAAGGACGCACAC
AGGGGAGAAGCCCTTCAAGTGCGAGTTTGAGGGCTGTGACCGGCGCTTCGCTAACAGCAGCGACCGCAAG
AAGCACATGCACGTGCACACGAGCGACAAGCCCTATCTTTGCAAGATGTGCGACAAGTCCTACACGCATC
CCAGTTCGCTGCGCAAACACATGAAGGTCCACGAATCCTCCTCGCAGGGCTCGCAGCCTTCGCCGGCCGC
CAGCTCTGGCTACGAATCCTCCACGCCTCCCACCATCGTGTCTCCCTCCACAGACAACCCGACCACAAGC
TCCTTATCGCCCTCCTCCTCCGCAGTCCACCACACAGCCGGCCACAGTGCGCTCTCTTCCAATTTTAACG
AATGGTACGTTTAA

Translation (447 aa):
MLLDAGPQYPAIGVTTFGASRHHSAGDVAERDVGLGINPFADGMGAFKLNPSSHELASAGQTAFTSQAPG
YAAAAALGHHHHPGHVGSYSSAAFNSTRDFLFRNRGFGDAAAAASAQHSLFAASAGGFGGPHGHTDAAGH
LLFPGLHEQAAGHASPNVVNGQMRLGFSGDMYPRPEQYGQVTSPRSEHYAAPQLHGYGPMNVNMAAHHGA
GAFFRYMRQPIKQELICKWIEPEQLANPKKSCNKTFSTMHELVTHVTVEHVGGPEQSNHICFWEECPREG
KPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRK
KHMHVHTSDKPYLCKMCDKSYTHPSSLRKHMKVHESSSQGSQPSPAASSGYESSTPPTIVSPSTDNPTTS
SLSPSSSAVHHTAGHSALSSNFNEWYV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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