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Report for CCDS57468.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57468.1 Public Mus musculus 6 Etnk1 23 108 98 CCDS HistoryNCBI Gene:75320Re-query CCDS DB by CCDS ID:57468.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57468.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032413.6 ENSMUSP00000032413.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032413.6Link to Ensembl Protein Viewer:ENSMUSP00000032413.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032413Re-query CCDS DB by Protein ID:ENSMUSP00000032413
Original member Current member NCBI NM_029250.2 NP_083526.2 Accepted alive Link to Nucleotide Sequence:NM_029250.2Link to Protein Sequence:NP_083526.2Re-query CCDS DB by Nucleotide ID:NM_029250Re-query CCDS DB by Protein ID:NP_083526Link to BLAST:NP_083526.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083526.2 363 Q9D4V0 363 100% 0 0

Chromosomal Locations for CCDS 57468.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 143167481 143167636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143180587 143180846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143184573 143184713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143186492 143186634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143195232 143195315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143197405 143197565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143203079 143203152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143203384 143203456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGGCCAATTACATCCACGTCCCGCCCGGCTCGCCCGAGGTGCCGAAGCTCGACGTGACGGTGCAGGACC
AGGAGGAGCAGCGCTGCCGCGACGGCGCCCTGAGCCTGCTGCGGCACCTGCGGCCGCACTGGGACCCCCG
GGAGGTGACCCTGCAGCTGTTCACAGATGGGATCACAAACAAGCTCATCGCCTGCTATGTGGGTGACACC
ATGGAAGATGTAGTTCTGGTGAGGATTTACGGCAACAAGACTGAACTGTTAGTCGACCGAGACGAGGAAG
TGAAAAGTTTCCGCGTGCTGCAGGCTCACGGCTGTGCACCTCAGCTCTACTGCACCTTTAATAACGGACT
GTGCTATGAGTTTATCCAGGGCGAAGCTTTGGACCCGCAGCATGTCTGCAACCCAGCCATTTTCAGGCTA
ATAGCTCGTCAGCTTGCTAAAATCCATGCTATTCATGCGCACAATGGCTGGATCCCCAAATCTAACCTAT
GGCTAAAGATGGGAAAATATTTCTCTCTCATTCCCACCGGATTTGCTGATGAAAACATTAATAAAAGGTT
CCTGAGTGAGATCCCAAGCCCGCAGCTTCTGCAGGAGGAGATGACTTGGATGAAAGAGCTGCTTTCAAGC
CTGGGCTCACCTGTGGTCCTTTGCCATAACGACCTGTTGTGTAAGAATATAATCTACAACGAGAAACAAG
GTGACGTACAGTTCATTGATTATGAGTATTCTGGATACAACTACCTGGCATATGATATTGGAAATCATTT
CAATGAATTTGCAGGTGTCAGCGATGTAGACTATAGTCTCTATCCAGATCGAGAGCTCCAGGGCCAGTGG
CTGCGCTCTTACCTTGAAGCTTACAAGGAGTATAAGGGCTTTGGCAGTGATGTCACTGAGAAGGAAGTCG
AGACTCTCTTCATTCAAGTCAATCAGTTTGCGTTGGCTTCTCATTTCTTTTGGGGACTCTGGGCTTTGAT
ACAAGCTAAGTACTCCACGATCGAGTTCGACTTCCTTGGGTATGCGGTTGTCCGTTTTAACCAGTACTTT
AAAATGAAGCCTGAGGTCACAGCACTAAAAATGCCCGAGTAA

Translation (363 aa):
MANYIHVPPGSPEVPKLDVTVQDQEEQRCRDGALSLLRHLRPHWDPREVTLQLFTDGITNKLIACYVGDT
MEDVVLVRIYGNKTELLVDRDEEVKSFRVLQAHGCAPQLYCTFNNGLCYEFIQGEALDPQHVCNPAIFRL
IARQLAKIHAIHAHNGWIPKSNLWLKMGKYFSLIPTGFADENINKRFLSEIPSPQLLQEEMTWMKELLSS
LGSPVVLCHNDLLCKNIIYNEKQGDVQFIDYEYSGYNYLAYDIGNHFNEFAGVSDVDYSLYPDRELQGQW
LRSYLEAYKEYKGFGSDVTEKEVETLFIQVNQFALASHFFWGLWALIQAKYSTIEFDFLGYAVVRFNQYF
KMKPEVTALKMPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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