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Report for CCDS23638.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23638.1 Public Mus musculus 9 Hhatl 23 108 98 CCDS HistoryNCBI Gene:74770Re-query CCDS DB by CCDS ID:23638.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23638.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035110.10 ENSMUSP00000035110.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035110.10Link to Ensembl Protein Viewer:ENSMUSP00000035110.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000035110Re-query CCDS DB by Protein ID:ENSMUSP00000035110
Original member Current member EBI ENSMUST00000163981.2 ENSMUSP00000131971.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163981.2Link to Ensembl Protein Viewer:ENSMUSP00000131971.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163981Re-query CCDS DB by Protein ID:ENSMUSP00000131971
Original member Current member NCBI NM_029095.2 NP_083371.2 Accepted alive Link to Nucleotide Sequence:NM_029095.2Link to Protein Sequence:NP_083371.2Re-query CCDS DB by Nucleotide ID:NM_029095Re-query CCDS DB by Protein ID:NP_083371Link to BLAST:NP_083371.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083371.2 503 Q9D1G3 503 100% 0 0

Chromosomal Locations for CCDS 23638.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 121784116 121784240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121784588 121784729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121785052 121785253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121788014 121788049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121788159 121788303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121788660 121788828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121788995 121789204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121789452 121789646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121789777 121789890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121790343 121790410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121790643 121790748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGGGCATCAAGACAGCACTGCCTGCAGCTGAGCTCGGCCTCTATTCACTGGTGCTGAGCGGTGCCCTGG
CTTATGCCGGCCGAGGTCTCCTGGAGGCATCACAAGATGGGGCCCACAGGAAGGCCTTCCGGGAGTCTGT
GAGACCTGGCTGGGAGTACCTGGGCCGGAAGATGGATGTGGCTGACTTCGAGTGGGTGATGTGGTTTACC
AACTTCCGAAATGTCATTGTCTTTGCCCTCTCTGGACACGTGCTGTTTGCCAAACTCTGCACGATGGTGG
CCCCCCAGCTCCGCTCCTGGATGTATGCTGTATATGGAGTCCTGGCTGTGGTGGGCACAATGGGCCCATG
GTACCTGCTGCTGCTGCTTGGCCACTGTATGGTCCTCTATGTGGCCTCACTCTTGGGCCAGCGTTGGCTG
TGCCTTGCCCTTGGTCTGGCCAGCTTGGCGTCCTTCAAGGTTGACCCTGGAATCTCTTGGCAGAGTGGGT
TTGTAACAGGCACCTTTGATCTTCAAGACGTACTGTTCCACGGTGGCAGCAGCTTCACAGTTCTGCGGTG
CACCAGCTTCGCCCTGGAGAGCTGCGCCCACCCCGACCGCCGCTACTCCCTTGCTGACCTGCTCAAGTAC
AATTTCTACTTGCCCTTCTTCTTCTTCGGACCCATCATGACCTTCGACCGCTTCCATGCTCAGGTGAGCC
AGGAGCCAGTGAGGCCAGAGGGCGAGCTATGGCACATTCAGGCCCAGGCGGGACTCAGCGCGGCAGCCAT
CGTGGCTGTTGACGTCTTCTTTCACTTCTTCTACATCCTCACCATCCCCAGCGATCTCAAGTTCGCCAGC
CGCCTCCCAGACAGTGCTCTTGCTGGCCTGGCGTACTCAAACCTGGTGTATGACTGGGTGAAGGCAGCGG
TCCTGTTTGGTGTTGTCAACACTGTGGCACGCCTGGACCACCTGGACCCTCCTCAGCCTCCCAAGTGCAT
TACTGCGCTCTATGTCTTCGGGGAAACGCACTTCGACCGTGGTATCAATGATTGGCTTTGCAAATATGTG
TATGACCACATTGGCGGGGATCACTCCACCGTGATCCCAGAGCTGGCCGCATCTGTGGCCACGTTCGTCG
TCACCACTCTGTGGCTCGGGCCTTGTGACATCGTCTACCTGTGGTCTGTTCTTAACTGCTTCGGCCTCAA
CTTTGAGCTCTGGGTACAGAAGCTGGCAGAGCGTGGGCCACTGGCACAGATAGAGGCCCGGCTATCAGAG
CAGATGTCTCGGAGGGTCCGGGCCCTCTGCGGGGCTGTAAATTTCTGGGCTATCATCATGTACAACCTCG
TGAGCCTGAACAGCCTTGAATTCACAGAGCTGGTTGCCCGACGCCTGATACTTACAGGCTTCCCCCAGAC
CACACTGGCGGTCTTGTTTGTCACCTACTGTGGTGTCCAGCTGGTAAAGGAGCGTGAGAGATCCCTGGCA
CTGGAGGAGGAGCAGCGGCAGGACAGAGAGAAGCTGGAGTAG

Translation (503 aa):
MGIKTALPAAELGLYSLVLSGALAYAGRGLLEASQDGAHRKAFRESVRPGWEYLGRKMDVADFEWVMWFT
NFRNVIVFALSGHVLFAKLCTMVAPQLRSWMYAVYGVLAVVGTMGPWYLLLLLGHCMVLYVASLLGQRWL
CLALGLASLASFKVDPGISWQSGFVTGTFDLQDVLFHGGSSFTVLRCTSFALESCAHPDRRYSLADLLKY
NFYLPFFFFGPIMTFDRFHAQVSQEPVRPEGELWHIQAQAGLSAAAIVAVDVFFHFFYILTIPSDLKFAS
RLPDSALAGLAYSNLVYDWVKAAVLFGVVNTVARLDHLDPPQPPKCITALYVFGETHFDRGINDWLCKYV
YDHIGGDHSTVIPELAASVATFVVTTLWLGPCDIVYLWSVLNCFGLNFELWVQKLAERGPLAQIEARLSE
QMSRRVRALCGAVNFWAIIMYNLVSLNSLEFTELVARRLILTGFPQTTLAVLFVTYCGVQLVKERERSLA
LEEEQRQDREKLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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