NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS78517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78517.1 Public Homo sapiens X PDZD4 24 110 108 CCDS HistoryNCBI Gene:57595Re-query CCDS DB by CCDS ID:78517.1Re-query CCDS DB by GeneID:57595See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 78517.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544474.5 ENSP00000442033.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544474.5Link to Ensembl Protein Viewer:ENSP00000442033.1Re-query CCDS DB by Nucleotide ID:ENST00000544474Re-query CCDS DB by Protein ID:ENSP00000442033
Original member Current member NCBI NM_001303514.2 NP_001290443.1 Accepted alive Link to Nucleotide Sequence:NM_001303514.2Link to Protein Sequence:NP_001290443.1Re-query CCDS DB by Nucleotide ID:NM_001303514Re-query CCDS DB by Protein ID:NP_001290443Link to BLAST:NP_001290443.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290443.1 660 Q76G19-2 660 100% 0 0

Chromosomal Locations for CCDS 78517.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 153803353 153804900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153805097 153805207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153805505 153805606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153806071 153806133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153806742 153806840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153830239 153830298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1983 nt):
ATGGGATGTAATATGTGCGTGGTCCAGAAACCGGAGGAGCAGTACAAAGTGATGCTGCAGGAGGTGGAGC
TGTATAAAAGCAGCCACCGGGACAAGCTGGGCCTGATGGTTTGCTACCGCACGGACGACGAGGAGGACCT
GGGCATTTATGTCGGAGAGGTAAATCCCAACAGCATTGCAGCCAAAGACGGCCGGATCCGTGAGGGAGAC
CGCATCATCCAGATTAACGGTGTAGACGTCCAGAACCGGGAAGAGGCGGTGGCCATCCTGAGCCAGGAAG
AGAACACCAACATCTCCCTGCTGGTGGCCCGACCTGAGAGTCAGCTGGCGAAAAGGTGGAAGGACAGCGA
CCGGGATGACTTCCTGGATGACTTTGGCTCTGAGAATGAGGGGGAGCTGCGTGCTCGTAAACTGAAATCA
CCCCCTGCCCAGCAGCCCGGAAACGAAGAGGAGAAGGGGGCTCCCGATGCCGGCCCAGGCCTGAGCAACA
GCCAGGAGCTGGACAGCGGGGTGGGCCGGACTGACGAGAGCACCCGGAACGAAGAGAGCTCTGAGCACGA
CCTGCTGGGGGACGAACCCCCGAGCTCCACCAACACCCCGGGAAGCCTGCGCAAGTTTGGCCTGCAAGGG
GACGCCCTGCAGAGCCGGGACTTCCATTTCAGCATGGACTCTCTGCTGGCCGAGGGGGCGGGGCTGGGAG
GGGGCGACGTCCCGGGCCTCACGGATGAGGAGTATGAGCGCTACCGTGAGCTCCTGGAGATCAAGTGCCA
CCTGGAGAACGGCAACCAGCTGGGCCTCCTCTTTCCCCGGGCCTCCGGAGGCAACAGCGCCCTGGACGTC
AACCGCAACGAGAGCCTGGGCCACGAGATGGCCATGCTGGAGGAGGAGCTAAGGCACCTGGAATTCAAGT
GCCGCAACATACTGCGGGCGCAGAAGATGCAGCAGCTGCGTGAGCGCTGCATGAAGGCCTGGCTGCTGGA
GGAGGAGAGCCTCTACGACCTGGCGGCCAGCGAGCCCAAGAAGCACGAGCTGTCCGACATCTCCGAGCTG
CCCGAGAAGTCGGACAAGGACAGCACCAGCGCCTACAACACTGGGGAGAGCTGCCGCAGCACCCCGCTGC
TTGTGGAGCCCCTGCCCGAGAGCCCCCTGCGGCGGGCCATGGCCGGCAACTCCAACTTGAACCGGACCCC
TCCCGGCCCCGCTGTTGCCACCCCCGCCAAGGCAGCTCCTCCACCGGGGAGCCCCGCCAAGTTCCGGTCC
CTCTCCCGGGATCCTGAGGCCGGCCGGAGGCAGCACGCGGAGGAGCGCGGCCGCCGCAACCCCAAGACGG
GGTTGACCCTGGAGCGTGTGGGCCCTGAAAGCAGCCCTTACCTCTCGCGGCGCCACCGCGGCCAGGGCCA
GGAGGGCGAGCACTACCACAGCTGCGTGCAGCTGGCCCCGACGCGAGGCCTGGAGGAGCTGGGCCACGGC
CCCCTGAGCTTGGCCGGTGGCCCTCGGGTGGGCGGGGTGGCGGCCGCGGCCACTGAAGCACCGCGCATGG
AGTGGAAAGTGAAGGTGCGCAGCGACGGAACCCGCTACGTGGCCAAGCGGCCCGTGCGAGATCGGCTGCT
GAAAGCCCGTGCCCTGAAGATCCGGGAGGAGCGCAGCGGTATGACGACCGACGACGACGCGGTGAGCGAG
ATGAAGATGGGCCGCTACTGGAGCAAGGAGGAGCGGAAGCAGCACCTGATCCGGGCCCGTGAGCAGCGGA
AGCGGCGCGAGTTCATGATGCAGAGCCGGCTGGAGTGCCTGCGGGAGCAGCAGAATGGCGACAGCAAGCC
CGAGCTCAACATCATTGCCCTGAGCCACCGCAAAACCATGAAGAAGCGGAACAAGAAGATCCTGGACAAC
TGGATCACCATCCAGGAGATGCTGGCCCACGGCGCGCGCTCCGCCGATGGCAAGCGGGTCTACAACCCTC
TTCTCTCAGTCACCACCGTGTGA

Translation (660 aa):
MGCNMCVVQKPEEQYKVMLQEVELYKSSHRDKLGLMVCYRTDDEEDLGIYVGEVNPNSIAAKDGRIREGD
RIIQINGVDVQNREEAVAILSQEENTNISLLVARPESQLAKRWKDSDRDDFLDDFGSENEGELRARKLKS
PPAQQPGNEEEKGAPDAGPGLSNSQELDSGVGRTDESTRNEESSEHDLLGDEPPSSTNTPGSLRKFGLQG
DALQSRDFHFSMDSLLAEGAGLGGGDVPGLTDEEYERYRELLEIKCHLENGNQLGLLFPRASGGNSALDV
NRNESLGHEMAMLEEELRHLEFKCRNILRAQKMQQLRERCMKAWLLEEESLYDLAASEPKKHELSDISEL
PEKSDKDSTSAYNTGESCRSTPLLVEPLPESPLRRAMAGNSNLNRTPPGPAVATPAKAAPPPGSPAKFRS
LSRDPEAGRRQHAEERGRRNPKTGLTLERVGPESSPYLSRRHRGQGQEGEHYHSCVQLAPTRGLEELGHG
PLSLAGGPRVGGVAAAATEAPRMEWKVKVRSDGTRYVAKRPVRDRLLKARALKIREERSGMTTDDDAVSE
MKMGRYWSKEERKQHLIRAREQRKRREFMMQSRLECLREQQNGDSKPELNIIALSHRKTMKKRNKKILDN
WITIQEMLAHGARSADGKRVYNPLLSVTTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH