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Report for CCDS17855.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17855.2 Public Mus musculus 3 Slc9b1 23 108 98 CCDS HistoryNCBI Gene:74446Re-query CCDS DB by CCDS ID:17855.2See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 17855.1
The coding region has been updated to represent an alternate exon or splice site that is more supported by the available conservation, transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 17855.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078568.11 ENSMUSP00000077644.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078568.11Link to Ensembl Protein Viewer:ENSMUSP00000077644.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000078568Re-query CCDS DB by Protein ID:ENSMUSP00000077644
Original member Current member NCBI NM_028946.4 NP_083222.2 Accepted alive Link to Nucleotide Sequence:NM_028946.4Link to Protein Sequence:NP_083222.2Re-query CCDS DB by Nucleotide ID:NM_028946Re-query CCDS DB by Protein ID:NP_083222Link to BLAST:NP_083222.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083222.2 565 Q8C0X2-1 565 99.823% 0 1

Chromosomal Locations for CCDS 17855.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 135348769 135348773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135355011 135355071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135357457 135357754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135371845 135372015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135373119 135373261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135374274 135374401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135382686 135382861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135390422 135390528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135392100 135392249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135393960 135394068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135394844 135394980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135397596 135397808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1698 nt):
ATGAGTGAGCACGACGTAGAATCAAACAAGAAGGATGATGGTTTCCAATCATCTGTAACTGTTGAGATGT
CCAAAGATCCTGATAGTTTTCATGAAGAAACTGTGGAACCAAAACCAGAACTGAAGGAACCGGAACCAAA
GGAACCAGAACCGAAGGAACCAGAAAGGAAGGAACCAGAAAGGAAGGAACCAGAAAGGAAGGAACCAGAA
AGGAAGGAACCAGAAAGGAAGGTACCAGGAAGAAGGGAAACACAAACGAAGGAAACACAAACAACCGAAA
TAGAAAGGAAGGAAACAAAAAAGAAGAGAGGGACAAATAGTTACTGTCCTCCACAAGGAACAATAAATAA
AACAATTACAGATGGAGCTGCACTCATTGCACTATGGACTCTACTCTGGGCCCTTATAGGTCAAGAAGTT
CTCCCTGGTGGAAATTTGTTTGGACTTGTAGTTATTTTTTACAGTGCTTTCCTTGGGGGTAAAATTTTAG
AATTCATTAGAATACCTGTAGTGCCTCCCCTCCCACCTCTCATTGGGATGTTACTGGCTGGTTTCACCAT
CAGGAATGTTCCGATTATTTATGAATTTGTCCATATTCCTACCACATGGTCTTCAGCTTTAAGAAACACT
GCCCTTACTATTATCCTAGTACGAGCTGGGCTTGGACTGGATCCACAGGCCTTGAAGCATCTGAAGGGAG
TCTGTCTGCGCTTGTCATTTGGTCCATGCTTCCTAGAAGCCTGCTCAGCCGCTCTCTTCTCCCACTTCAT
TATGAACTTTCCTTGGCAATGGGGGTTCCTACTAGGTTTTGTCCTAGGCGCTGTCTCTCCTGCTGTTGTC
GTCCCCAACATGCTAATGTTGCAGGAGAATGGGTATGGTGTTGAGAAAGGCATCCCGACCTTGCTGGTGG
CAGCTAGCAGCATGGACGACATTGTGGCCATCACTGGATTCAACACATTCTTGAGCATAGTCTTTTCCTC
GGGTAGTGTGATTAGCAACATCCTATCGTCCTTGCGGGACGTTCTTATTGGGGTGCTGGTAGGAATTGTT
ATGGGAGTTTTTGTTCAGTATTTTCCAAGTGGAGATCAGGAGAGACTTACGCAGAGGCGAGCCTTCCTAG
TTCTGAGTATGTGTATTTCTGCTGTCTTAGGCTGCCAGCACATTGGCTTACATGGATCTGGAGGACTGGT
CACACTAGTATTGTCGTTCATGGCAGCAAAAAGATGGGCTGAAGAGAAGGTTGGAATCCAAAAAATTGTT
GCAAACACATGGAATGTTTTTCAGCCGCTTCTTTTTGGCTTAGTTGGAACAGAAGTATCTGTTGAATCTC
TTGAATCAAAAACCATTGGCATGTGCCTTGCTACCTTGGGTTTGGCACTATCTGTTCGAATTTTATCCAC
TTTTGTACTGATGTCTTTTGCTAACTTCCGTTTTAAGGAGAAAGTATTTATTGCTTTATCATGGATCCCT
AAAGCTACAGTCCAGGCTGTCTTAGGACCTCTGGCTCTAGAAACAGCAAGGGTCATGGCACCCCACTTGG
AAGGATACGCGAAGGCTGTGATGACAGTGGCCTTCCTAGCCATCCTGATTACAGCTCCAAATGGAGCCCT
CCTCATCGGCATACTGGGACCCAAAATCCTTGAACAGAGTGAGGTGACATTCCCTTTGAAAGTTGAGCTC
TCGAACTTCCATCATTAA

Translation (565 aa):
MSEHDVESNKKDDGFQSSVTVEMSKDPDSFHEETVEPKPELKEPEPKEPEPKEPERKEPERKEPERKEPE
RKEPERKVPGRRETQTKETQTTEIERKETKKKRGTNSYCPPQGTINKTITDGAALIALWTLLWALIGQEV
LPGGNLFGLVVIFYSAFLGGKILEFIRIPVVPPLPPLIGMLLAGFTIRNVPIIYEFVHIPTTWSSALRNT
ALTIILVRAGLGLDPQALKHLKGVCLRLSFGPCFLEACSAALFSHFIMNFPWQWGFLLGFVLGAVSPAVV
VPNMLMLQENGYGVEKGIPTLLVAASSMDDIVAITGFNTFLSIVFSSGSVISNILSSLRDVLIGVLVGIV
MGVFVQYFPSGDQERLTQRRAFLVLSMCISAVLGCQHIGLHGSGGLVTLVLSFMAAKRWAEEKVGIQKIV
ANTWNVFQPLLFGLVGTEVSVESLESKTIGMCLATLGLALSVRILSTFVLMSFANFRFKEKVFIALSWIP
KATVQAVLGPLALETARVMAPHLEGYAKAVMTVAFLAILITAPNGALLIGILGPKILEQSEVTFPLKVEL
SNFHH


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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