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Report for CCDS35677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35677.1 Public Mus musculus 1 Slco6c1 23 108 98 CCDS HistoryNCBI Gene:74441Re-query CCDS DB by CCDS ID:35677.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 35677.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027569.13 ENSMUSP00000027569.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027569.13Link to Ensembl Protein Viewer:ENSMUSP00000027569.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027569Re-query CCDS DB by Protein ID:ENSMUSP00000027569
Original member Current member NCBI NM_028942.4 NP_083218.1 Accepted alive Link to Nucleotide Sequence:NM_028942.4Link to Protein Sequence:NP_083218.1Re-query CCDS DB by Nucleotide ID:NM_028942Re-query CCDS DB by Protein ID:NP_083218Link to BLAST:NP_083218.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083218.1 706 Q8C0X7-1 706 100% 0 0

Chromosomal Locations for CCDS 35677.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 97062394 97062530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97066033 97066170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97068984 97069048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97072795 97072982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97075829 97075982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97081321 97081516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97087873 97088017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97098452 97098561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97104788 97104906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97118539 97118635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97119805 97119993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97125592 97125852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97127853 97128174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2121 nt):
ATGGCCCATGTCCGCAATAAAAAGTCAGATGACAAAAAGGCTATGGTGGTAGCGAAGGAAGATACAAACA
AAAGTGAATCTGAGGGAGTCACGAAATTACAAACGTATCTGAAAACAATACCAATTGCCAAGAAGAAGTT
CGCAAAGCTCCCAAAAAGGAAGAAGTCTCCTACAAGTGCCGAACTGTTGTTAATAGATCCAAGATACAGT
GCTTCCAAGGAGGGGCCACTTGGTTTGGGCCCTATAGTTTTGCCTTTTGTACAGCGTTTCAACAACATTG
ATGGCTTTATGACTTTATATGTTGCAGCAGTCTTAATTCATGGTGCTTTATTTGCTGTTGTTGATATGAC
TTTAAACATATATCAAGTTCAATTTTCTCTGACGAGGACAGAGTGGTATTTGATGGATTTCAGTGATTAT
ATTGCGTCTTTTGTCGTAGCAATAATTATAGCACACTTTGGAAGTAAAGGGAACAGGACAAGATGGATTG
CAGCTTCCTGCATTTTAATGGGACTTGAATCGATGTTATTTGCTTTTCCTTTCTTTACATATGAAATTAT
AATACCGGGAAGACAAAGCATAGAGTTGTGCATGGAAGAAAATGAAAAGAGAAATATAATTTGTGGAAAC
TCAGTTCCGAACAGATCAAAATGTATCTATTTCCACATCGCTGGGCAGTGTATCCATGGCATAGCAGGGA
TGCCAATTTATATCCTTGGCATAACCTTCATTTTTGACCACATTCCCACAAGTTCATGCGGCTTCTATTT
AGCTATTGGACATTCTGCATATCTGATAGGATACCTTCTGGGTATGGTAGGAGGACTGCAGAATTTTCAG
CCTCCACCCAAAGAAAAAACAGTCGAAATTGAACCAGCGAAGGTGTACCAACTGTTGCAGAGTGGGTGGT
GGAAAACTTTTTTGATTATTGCTGCAATCTCATTTTGTGTATCTTTCATGATGGTATGTTTTCCAACTAG
TTTACCTGGTGCACATAAGTTAAGACTTGCGAAAAGAAAGGAACCTCCCACCATTGACAGGAGACTTAAA
GATATGAAAATTCAACCTCATTTGAAGGGTTTTCTTCATAATATTTGGCATATTTTGAAGAACCCACTGA
TGCTGACCCAGGCAATCTGCAAAGTCTCAGAGTATTTGACTTTTAATACATCTTTATACTTTTTGCCCCA
CCATTTACAAACTCAGTTTTTAATAACACCCGGAATTGCCTCTCTGCTCACAGGAGCATTTGTACTTCCT
GGAGGCATAATTGGCCATTTTCTTGGCGGTTTAATTGTTGACAGGTTGGAAATGACTAATAAGAACAAGC
TGAAATTTACATTAGTGACAACTGTTGTATCAGTTGGGCTTTTCCTATTAATCTTTTTTGTAGAGTGTCA
AACAACAACATTTGCTGGAATCAATGAAGATTATGATGGCTATGGTCAACTTGGAAACCTCACAGCTGAC
TGCAATGAGTATTGTGATTGCACCACTTCCCTCTATACTTCCATATGTGGAAGAGATGAAAAAGAATATT
TTTCTCCCTGCTTTGCAGGCTGCAAAGCTACTAAAGTATCCCAGACAGAAAAGACATACTACAATTGTTC
TTGCATTAAAGAAGGATTGGCAGCTTCAGATGATGAAGGTCAATTTATTGATGCTATTGCTGGAACATGT
GACAGCGACTGTCTTAAGTTACCTTTATTTTTTGCCTTTTACTTTTCGGCTACTGTTTTTTCTAATATGT
GCAGTATACCTGTCATCTCAATTATCCTCCAAAGTGTACCTGCCAACTTCACTTCACTTAGCCTGGGTGT
GACCTACGCCATTGTGAAATTTGTTGCATCTGTCCCTGCACCACTCTTGTTTCGACTGTCGTCAGCTATA
GCTTGTATATACTGGGACAATAATAGATGTGGAGGGAAAGAACGTTGTTGGATCTATAATAAGAACATAT
TGGTCTACGAATTTATGGGAATATGGATGAGTTCCCAATTAATCATAGTCTTGTTGAACATTTATGCAAT
TCAGATACATGATGTTGTGGTACATGGAGAAATCACTGAGAGCAAAACCACTGTAAAAGATGTAAAAGAA
CAAAAAGAAAGAAAGGCTTAA

Translation (706 aa):
MAHVRNKKSDDKKAMVVAKEDTNKSESEGVTKLQTYLKTIPIAKKKFAKLPKRKKSPTSAELLLIDPRYS
ASKEGPLGLGPIVLPFVQRFNNIDGFMTLYVAAVLIHGALFAVVDMTLNIYQVQFSLTRTEWYLMDFSDY
IASFVVAIIIAHFGSKGNRTRWIAASCILMGLESMLFAFPFFTYEIIIPGRQSIELCMEENEKRNIICGN
SVPNRSKCIYFHIAGQCIHGIAGMPIYILGITFIFDHIPTSSCGFYLAIGHSAYLIGYLLGMVGGLQNFQ
PPPKEKTVEIEPAKVYQLLQSGWWKTFLIIAAISFCVSFMMVCFPTSLPGAHKLRLAKRKEPPTIDRRLK
DMKIQPHLKGFLHNIWHILKNPLMLTQAICKVSEYLTFNTSLYFLPHHLQTQFLITPGIASLLTGAFVLP
GGIIGHFLGGLIVDRLEMTNKNKLKFTLVTTVVSVGLFLLIFFVECQTTTFAGINEDYDGYGQLGNLTAD
CNEYCDCTTSLYTSICGRDEKEYFSPCFAGCKATKVSQTEKTYYNCSCIKEGLAASDDEGQFIDAIAGTC
DSDCLKLPLFFAFYFSATVFSNMCSIPVISIILQSVPANFTSLSLGVTYAIVKFVASVPAPLLFRLSSAI
ACIYWDNNRCGGKERCWIYNKNILVYEFMGIWMSSQLIIVLLNIYAIQIHDVVVHGEITESKTTVKDVKE
QKERKA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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