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Report for CCDS26995.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26995.1 Public Mus musculus 14 Ap5m1 23 108 98 CCDS HistoryNCBI Gene:74385Re-query CCDS DB by CCDS ID:26995.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26995.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037473.5 ENSMUSP00000046536.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037473.5Link to Ensembl Protein Viewer:ENSMUSP00000046536.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000037473Re-query CCDS DB by Protein ID:ENSMUSP00000046536
Original member Current member NCBI NM_001360070.1 NP_001346999.1 Accepted alive Link to Nucleotide Sequence:NM_001360070.1Link to Protein Sequence:NP_001346999.1Re-query CCDS DB by Nucleotide ID:NM_001360070Re-query CCDS DB by Protein ID:NP_001346999Link to BLAST:NP_001346999.1
Original member Current member NCBI NM_144535.5 NP_653118.3 Accepted alive Link to Nucleotide Sequence:NM_144535.5Link to Protein Sequence:NP_653118.3Re-query CCDS DB by Nucleotide ID:NM_144535Re-query CCDS DB by Protein ID:NP_653118Link to BLAST:NP_653118.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346999.1 490 Q8BJ63-1 490 99.7959% 0 1
NP_653118.3 490 Q8BJ63-1 490 99.7959% 0 1

Chromosomal Locations for CCDS 26995.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 49066791 49066864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49073549 49074194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49078695 49078922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49080236 49080375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49080836 49080921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49081011 49081129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49083859 49083955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49086245 49086327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGGCCCTGCGGGCAGTGTGGCTCATACGTCACGAACCAGGAACTCCACTTGGAGGCACCGTCAGATTCT
CCAGACGATACCCAACTGTTGAAAAGCGAGCCAAAGCCTTCAATGGAATGACTTATGTTCCTGTACCTGA
AGATGGCCCCTTTCTTAGAGCATTGCTCTTTCAACTTAGACTATTGGATGATGATAAGGACTTCATGGAG
AGACGTGATGGCTGCTCACGCATCAATAAAACATCCATCTATGGGCTTTCAGTAGGAGGTGAAGAGCTCT
GGCCAGTCATTGCCTTCCTGAGGGATAGCATGATATATGCAAGTGTTCCATTAGTTGAACAAGCTCTGTC
CCCTCGCCCACCTTTAATTAGCATTAGTGGGGTCTCACAAGGCTTGGAACTGCTGTTGGGGATACAGGAT
TTTCTTTACTCGAGTCAGAAAAATGACACTGACCTACACACAAAACTGAGTCAGTTGCCTGACTTGCTTC
TACAGGCTTGTCCTTTGGGTACTTTATTGGATGCTAACTTGCAGAATTCACTGAATAGCATTAATTCCGT
ATCTGTGACTCAGCCGCAAAAACAGCCAGCCTGGAAAGTTGGAGCATACAAAGGAAAAGCACAGATTTCT
ATTTCTATCACCGAAACGGTAAAATGCATGCAATATGGTAAGCAGGATATAGCAGACACATGGCAAGTTG
CCGGAACAGTCGCTTGCAAGTGTGACTTGGAAGGGGTCATGCCAGCTGTTACCATCAGCTTGAGTCTCCC
CACCAACGGGTCTCCACTTCAGGATATTATTGTTCATCCCTGTGTGACTTCTCTGGATTCTGCCATTCTG
ACTTCTAGTAGCATTGACACAATGGAGGATTCTGCATTTAGTGGGCCGTATAAATTTCCATTCACTCCGC
CTTTAGAGTCCTTCAACTTATGCCACTACACTTCTCAGGTTCCTGTCCCACCAATACTGGGTTCTTACCA
CATGAAAGAAGAAGGAGTACAGCTAAAAGTAACAGTTAACTTCAAACTCCATGAAAGTGTGAGAAATAAT
TTTGAAGTCTGTGAAGCTCACATACCTTTTTACAACAGAGGTCCAATTACCCATTTGGAATACAAAGCTA
GTTTTGGTCAACTTGAGGTATTTCGAGAAAAAAGCTTACTGGTCTGGATTATCGGCCAGAAGTTCCCCAA
ATCAATGGAAATTAGTCTTTCTGGAACTCTAACTTTTGGAGTTAAGGGCCATAACAAGCAGCCATTTGAT
CACATTTGTATTGGAAATACAGCGTATATAAAGCTTAACTTTAGGATTGCAGATTATACACTCACTGGAT
GTTATGCAGACCAGCATTCAGTTCAAGTTTTTGCATCAGGAAAGCCAAAAATAAGTGCATATCGGAAACT
AATTTCTTCTGATTATTACATCTGGAATTCTAAAGCACCTGCTCCAGTAACATACGCATCATTGTTACCA
TGA

Translation (490 aa):
MALRAVWLIRHEPGTPLGGTVRFSRRYPTVEKRAKAFNGMTYVPVPEDGPFLRALLFQLRLLDDDKDFME
RRDGCSRINKTSIYGLSVGGEELWPVIAFLRDSMIYASVPLVEQALSPRPPLISISGVSQGLELLLGIQD
FLYSSQKNDTDLHTKLSQLPDLLLQACPLGTLLDANLQNSLNSINSVSVTQPQKQPAWKVGAYKGKAQIS
ISITETVKCMQYGKQDIADTWQVAGTVACKCDLEGVMPAVTISLSLPTNGSPLQDIIVHPCVTSLDSAIL
TSSSIDTMEDSAFSGPYKFPFTPPLESFNLCHYTSQVPVPPILGSYHMKEEGVQLKVTVNFKLHESVRNN
FEVCEAHIPFYNRGPITHLEYKASFGQLEVFREKSLLVWIIGQKFPKSMEISLSGTLTFGVKGHNKQPFD
HICIGNTAYIKLNFRIADYTLTGCYADQHSVQVFASGKPKISAYRKLISSDYYIWNSKAPAPVTYASLLP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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