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Report for CCDS40655.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40655.1 Public Mus musculus 9 Tbc1d21 23 108 98 CCDS HistoryNCBI Gene:74286Re-query CCDS DB by CCDS ID:40655.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40655.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040217.5 ENSMUSP00000037525.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040217.5Link to Ensembl Protein Viewer:ENSMUSP00000037525.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000040217Re-query CCDS DB by Protein ID:ENSMUSP00000037525
Original member Current member NCBI NM_028854.4 NP_083130.1 Accepted alive Link to Nucleotide Sequence:NM_028854.4Link to Protein Sequence:NP_083130.1Re-query CCDS DB by Nucleotide ID:NM_028854Re-query CCDS DB by Protein ID:NP_083130Link to BLAST:NP_083130.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083130.1 336 Q9D9D3 336 100% 0 0

Chromosomal Locations for CCDS 40655.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 58359846 58359878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58360434 58360517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58361181 58361297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58362025 58362125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58362378 58362474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58362815 58362915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58363013 58363123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58363773 58363867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58366620 58366723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58366853 58366960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58370266 58370325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGACTACCCTTTCTCCAGAAAACAGCCTCTCTGCCAGGCGATCAGCCACCTTCATTCTGGAGAAGAGAA
ACCCCCCCATTGACAAGGCAGAATGGGACAGCTTCTTCGATGAGAATGGTCACTTGGCCAAGTCACGAGA
CTTCATTTGCATTAACATCCTGGAAAGGGGACTACACCCCTTCGTGAGGACAGAAGCCTGGAAGTTCCTC
ACAGGCTACTACTCGTGGCAGAGTTCACGGGATGAGCGGCTCATGGTGGACAGCAACAGGAGGAGGAACT
ATAACTCCTTGTGCCAGATGTATGAGAAAATCCAGCCCCTGCTGGAAAACTTACATGGGAACTTCACAGA
GACTCGGAACAACATCGCGTACGACATCCAGAGGCTGTATGATAAAGATCCCCTGGGCAATGTGCTTATA
GACAAGAAGAAATTGGAGAAGACCCTGCTGCTGAGTTATGTCTGCAACACAAAGGCTGAGTACCAGCGAG
GCTTCCATGAGATGGTGATGCTTTTCCAGCTGATGGTGGAGCACGACCATGAGACCTTCTGGCTCTTCCA
GTTCTTCCTGCAGAAAACAGAGCACAGCTGTGTCATCAACATCGGTGTAGGCAAGAATCTGGACATGCTC
AACAGCCTGATCACTCTACTGGACCCTGAATTTGCTGAACACCTCAAAGGGAAGGGCTCAGGGGCTGTGC
AGTCCCTCTTCCCGTGGTTCTGCCTTTGCTTCCAGCGTGCCTTCAAAACCTTCGATGATGTCTGGAGGCT
CTGGGAGGTCCTGCTGACGGGGAAGCCCTGCAGAAACTTCCAGGTGCTGGTGGCCTACAGCATGCTACAG
ATGGTGCGCGAGCAGGCGCTTCTGGAGTGTATGAGCGGTGACGCCATTCTCATGGCCTGCAACAACCTTA
TCGACCTTGATGCGGATGAGCTGATCTCTGCTGCCTGCGTGGTTTATTCTGAGCTCATGCAAAAGGAGGT
CCCTCAGCCATTAAAGGAGTTCCTTCTCTAA

Translation (336 aa):
MTTLSPENSLSARRSATFILEKRNPPIDKAEWDSFFDENGHLAKSRDFICINILERGLHPFVRTEAWKFL
TGYYSWQSSRDERLMVDSNRRRNYNSLCQMYEKIQPLLENLHGNFTETRNNIAYDIQRLYDKDPLGNVLI
DKKKLEKTLLLSYVCNTKAEYQRGFHEMVMLFQLMVEHDHETFWLFQFFLQKTEHSCVINIGVGKNLDML
NSLITLLDPEFAEHLKGKGSGAVQSLFPWFCLCFQRAFKTFDDVWRLWEVLLTGKPCRNFQVLVAYSMLQ
MVREQALLECMSGDAILMACNNLIDLDADELISAACVVYSELMQKEVPQPLKEFLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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