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Report for CCDS18974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18974.1 Public Mus musculus 4 Errfi1 23 108 98 CCDS HistoryNCBI Gene:74155Re-query CCDS DB by CCDS ID:18974.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18974.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030811.1 ENSMUSP00000030811.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030811.1Link to Ensembl Protein Viewer:ENSMUSP00000030811.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000030811Re-query CCDS DB by Protein ID:ENSMUSP00000030811
Original member Current member EBI ENSMUST00000073600.8 ENSMUSP00000073285.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073600.8Link to Ensembl Protein Viewer:ENSMUSP00000073285.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000073600Re-query CCDS DB by Protein ID:ENSMUSP00000073285
Original member Current member NCBI NM_001356323.1 NP_001343252.1 Accepted alive Link to Nucleotide Sequence:NM_001356323.1Link to Protein Sequence:NP_001343252.1Re-query CCDS DB by Nucleotide ID:NM_001356323Re-query CCDS DB by Protein ID:NP_001343252Link to BLAST:NP_001343252.1
Original member Current member NCBI NM_133753.2 NP_598514.1 Accepted alive Link to Nucleotide Sequence:NM_133753.2Link to Protein Sequence:NP_598514.1Re-query CCDS DB by Nucleotide ID:NM_133753Re-query CCDS DB by Protein ID:NP_598514Link to BLAST:NP_598514.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343252.1 461 Q99JZ7 461 100% 0 0
NP_598514.1 461 Q99JZ7 461 100% 0 0

Chromosomal Locations for CCDS 18974.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 150865148 150865269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150865364 150865440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150866316 150867502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGTCAACAGCAGGAGTTGCTGCTCAGGATATTCGAGTCCCATTAAAAACTGGATTTCTCCATAATGGTC
AGGCCTTGGGGAATATGAAGTCCTGCTGGGGCAGTCACAGTGAGTTTGAAAATAACTTTTTAAATATTGA
TCCAATAACCATGGCCTACAATCTGAACTCCCCTGCTCAGGAGCACCTAACAACTGTTGGATGTGCTGCT
CGGTCTGCTCCAGGGAGCGGCCACTTCTTTGCAGAGTGTGGTCCATCTCCAAGGTCAAGCTTGCCCCCTC
TTGTTATCTCACCAAGTGAAAGCTCGGGACAGCGTGAAGAGGATCAAGTTATGTGTGGTTTTAAGAAACT
CTCAGTGAATGGGGTCTGCACTTCCACACCTCCACTTACACCCATTAAAAGCTGCCCTTCCCCTTTCCCC
TGTGCGGCTCTGTGTGATCGGGGTTCTCGGCCGCTCCCGCCACTGCCCATCTCTGAAGACCTATGTGTGG
ATGAGGCCGACAGTGAGGTAGAGCTTCTAACCACCAGCTCAGACACAGACTTGCTTTTAGAAGACTCTGC
GCCTTCAGATTTCAAATACGATGCTCCTGGCAGGCGCAGCTTCCGTGGGTGCGGCCAGATCAACTATGCA
TATTTTGACAGCCCAACTGTTTCTGTGGCAGATCTTAGCTGTGCATCTGACCAGAACAGAGTTGTTCCAG
ACCCAAACCCTCCCCCACCTCAAAGCCATCGCAGATTAAGGAGGTCTCACTCAGGACCAGCTGGGTCATT
TAACAAGCCAGCCATTCGGATATCTAGCTGCACACACAGAGCTTCTCCTAGCTCTGATGAAGACAAGCCT
GAGGTCCCTCCCAGGGTTCCTATACCTCCTAGGCCAGCAAAGCCAGACTATAGACGGTGGTCAGCAGAAG
TGACCTCCAACACCTACAGTGATGAAGATAGGCCTCCCAAAGTCCCCCCGAGAGAACCTTTGTCTCGGAG
TAACTCCCGTACCCCAAGTCCTAAAAGCCTTCCGTCTTACCTCAATGGGGTCATGCCCCCAACACAGAGC
TTCGCTCCTGACCCCAAGTATGTCAGCAGCAAAGCCCTGCAGAGACAGAGCAGCGAAGGATCTGCCAACA
AGGTTCCTTGCATCCTGCCCATTATTGAAAATGGGAAGAAGGTTAGCTCAACGCATTATTACTTACTACC
TGAGAGGCCACCGTACCTGGACAAATATGAAAAGTATTTTAAGGAAGCAGAAGAAACAAACCCAAGCACC
CAAATTCAGCCATTACCTGCTGCCTGTGGTATGGCCTCTGCCACAGAAAAGCTGGCCTCCAGAATGAAAA
TAGATATGGGTAGCCACGGGAAGCGCAAACACTTATCCTACGTGGTTTCTCCATAA

Translation (461 aa):
MSTAGVAAQDIRVPLKTGFLHNGQALGNMKSCWGSHSEFENNFLNIDPITMAYNLNSPAQEHLTTVGCAA
RSAPGSGHFFAECGPSPRSSLPPLVISPSESSGQREEDQVMCGFKKLSVNGVCTSTPPLTPIKSCPSPFP
CAALCDRGSRPLPPLPISEDLCVDEADSEVELLTTSSDTDLLLEDSAPSDFKYDAPGRRSFRGCGQINYA
YFDSPTVSVADLSCASDQNRVVPDPNPPPPQSHRRLRRSHSGPAGSFNKPAIRISSCTHRASPSSDEDKP
EVPPRVPIPPRPAKPDYRRWSAEVTSNTYSDEDRPPKVPPREPLSRSNSRTPSPKSLPSYLNGVMPPTQS
FAPDPKYVSSKALQRQSSEGSANKVPCILPIIENGKKVSSTHYYLLPERPPYLDKYEKYFKEAEETNPST
QIQPLPAACGMASATEKLASRMKIDMGSHGKRKHLSYVVSP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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