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Report for CCDS52436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52436.1 Public Mus musculus 7 Syce1 23 108 98 CCDS HistoryNCBI Gene:74075Re-query CCDS DB by CCDS ID:52436.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52436.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026553.5 ENSMUSP00000026553.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026553.5Link to Ensembl Protein Viewer:ENSMUSP00000026553.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000026553Re-query CCDS DB by Protein ID:ENSMUSP00000026553
Original member Current member NCBI NM_001143765.1 NP_001137237.1 Accepted alive Link to Nucleotide Sequence:NM_001143765.1Link to Protein Sequence:NP_001137237.1Re-query CCDS DB by Nucleotide ID:NM_001143765Re-query CCDS DB by Protein ID:NP_001137237Link to BLAST:NP_001137237.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137237.1 329 Q9D495 329 100% 0 0

Chromosomal Locations for CCDS 52436.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140777661 140777732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140777917 140777998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140778135 140778245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140778309 140778432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140778510 140778576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140779065 140779128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140779337 140779426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140779594 140779648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140779883 140779930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140780457 140780531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140780875 140780934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140782027 140782089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140787736 140787814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGCCACCAGACCGCAGCCGTTGGGTATGGAGCCCGAGGGCTCAGCAGACCTGCTCCACGGGCCTGAGG
GGGCCAGAGGGCAGTATGGGTCCACACAGAAAATTGAAGACTTAATGGACATGGTGAAAAAGTTGCAGAA
AGTGGGAAGCCTAGAGCCCCGGATTGAGGTCCTGATTAACCGTATTAATGAGGTTCAGCAAGCAAAAAAG
AAAGCCAGTGAGGAGCTTGGAGAGGCCCAGACTGTCTGGGACAACCTGCAGAAGGAACTGGACTTACTAC
GTGAAGAGAAAGTACGTCTGAAGGATATTTTGAACAGAAAGGAAGAGACCCTGAGGATTATGCAGCTGCA
CTGCCAGGAGAAGGAAAGTGAGGCACAGAGGAAGCACAGCATGTTGCAGGAGTGTAAAGAGAGAATTTCT
TTCCTGAACTCCCAGATCGACAAAGAGAAGGCCAAACTAAGAAAACTGAGGTTGGATTTTGAAGAACATC
TGGAGACTTTGATGAGTCAACATAAGGACACCTTGGAATTTCATAAGCCTGAACATCTGACAAAGGAGAT
GTGTGTTTTGGACAGCAGCAAGGAGCAGCTGCTCAAGGAAGAGAAACTGATGAAAGTAAAGCTGGAGGAT
GTGAGACAGCGGCTGTGTGCCCTGGGCGGGCCTGAGGGTTCTTCCAGCCTCATTGAGGGACTCTTCCTCC
GAAGCCATGAGGCAGCTGCAGCAATGCAGATGTTCAAGGATGAGAACAAGAAAGCTGAGGAGTTCCTAGA
GGCTGCAGCTCAGCAGCACGAGCAGCTGCAGCAGAGGTGCCACCAGCTACAGCAGAAACGGCAGAGGCTG
AAGGAAGAACTGGAAAAGCATGGGGTACAGATCCTTGCTCATAGTACGCAAAACGAAGAAGACAGCTCAT
GGAGGATGGCCAGTCCTAAACCTGTAGAAGTCCACGAGGAGACAGCCCAAGACCAAGAGCGCCCATCAAG
CAGGACCTAA

Translation (329 aa):
MATRPQPLGMEPEGSADLLHGPEGARGQYGSTQKIEDLMDMVKKLQKVGSLEPRIEVLINRINEVQQAKK
KASEELGEAQTVWDNLQKELDLLREEKVRLKDILNRKEETLRIMQLHCQEKESEAQRKHSMLQECKERIS
FLNSQIDKEKAKLRKLRLDFEEHLETLMSQHKDTLEFHKPEHLTKEMCVLDSSKEQLLKEEKLMKVKLED
VRQRLCALGGPEGSSSLIEGLFLRSHEAAAAMQMFKDENKKAEEFLEAAAQQHEQLQQRCHQLQQKRQRL
KEELEKHGVQILAHSTQNEEDSSWRMASPKPVEVHEETAQDQERPSSRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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