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Report for CCDS30725.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30725.1 Public Homo sapiens 1 LDLRAD1 24 110 108 CCDS HistoryNCBI Gene:388633Re-query CCDS DB by CCDS ID:30725.1Re-query CCDS DB by GeneID:388633See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30725.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371360.2 ENSP00000360411.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371360.2Link to Ensembl Protein Viewer:ENSP00000360411.1Re-query CCDS DB by Nucleotide ID:ENST00000371360Re-query CCDS DB by Protein ID:ENSP00000360411
Original member Current member NCBI NM_001010978.4 NP_001010978.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010978.4Link to Protein Sequence:NP_001010978.2Re-query CCDS DB by Nucleotide ID:NM_001010978Re-query CCDS DB by Protein ID:NP_001010978Link to BLAST:NP_001010978.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010978.2 205 Q5T700-1 205 100% 0 0

Chromosomal Locations for CCDS 30725.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 54008982 54009130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54010282 54010410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54012143 54012280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54014236 54014364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54017376 54017427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54018092 54018112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGAACAAGGTCTTCCCCCAGGGAGAGAATGGCTACACTGCTGCTGAATCCAAAGCCCACCCTGGAGGGG
AAGCAGGCGGCGGCCACCTCTGCTGCTCACGTCGCGGGGCCTGCCTCTCTGCCTCTCTGCTGCTCCTCCT
GGCAACTGTGGCGGCCCTCATCGCCTTGGTCACCATTCTTGGACTCCCATCATGCACCCCAGGAGCCCAA
GCTTGTATAACACTGACAAACAGGACAGGCTTCTTGTGCCATGACCAGAGGAGCTGCATTCCAGCCAGTG
GGGTCTGTGATGGCGTTCGCACCTGTACCCACGGCGAGGACGAGGATGAGAGCTTGTGCCGAGATGTGCC
CCAGAGCCTCCCCCACTTCCTTGTGGCCCACTGTGGAGACCCGGCCTCCTGGATCTACTCAGACCAAAAA
TGTGATGGCACTAACAACTGCGGGGACTGTTCAGATGAACTGAGCCCAGTAACTGTGTGCCCACCCTGCG
GCCCTGGGTGGTGGCGCTGTCCTTCAACCTTCTTCAAGTACTGCGACTGTATACCGAGGCATCTCTGCCG
CGACCATGTACAGCACTGCTCCGACTGGTCCGATGAGTATGCCTGTCCCGGACCCTGA

Translation (205 aa):
MNKVFPQGENGYTAAESKAHPGGEAGGGHLCCSRRGACLSASLLLLLATVAALIALVTILGLPSCTPGAQ
ACITLTNRTGFLCHDQRSCIPASGVCDGVRTCTHGEDEDESLCRDVPQSLPHFLVAHCGDPASWIYSDQK
CDGTNNCGDCSDELSPVTVCPPCGPGWWRCPSTFFKYCDCIPRHLCRDHVQHCSDWSDEYACPGP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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