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Report for CCDS53173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53173.1 Public Mus musculus X Satl1 23 108 98 CCDS HistoryNCBI Gene:73809Re-query CCDS DB by CCDS ID:53173.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53173.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026601.2 ENSMUSP00000026601.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026601.2Link to Ensembl Protein Viewer:ENSMUSP00000026601.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000026601Re-query CCDS DB by Protein ID:ENSMUSP00000026601
Original member Current member NCBI NM_028655.1 NP_082931.1 Accepted alive Link to Nucleotide Sequence:NM_028655.1Link to Protein Sequence:NP_082931.1Re-query CCDS DB by Nucleotide ID:NM_028655Re-query CCDS DB by Protein ID:NP_082931Link to BLAST:NP_082931.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082931.1 744 Q9D5N8 744 100% 0 0

Chromosomal Locations for CCDS 53173.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 112384459 112384629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112385372 112385412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112389467 112389568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112389965 112390045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112399249 112399300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112404969 112406756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2235 nt):
ATGGATCAACCAGGCACTTATCAATCAGGTATGACACAACCAAGTGTAAGCCAACCAGCTATGAGTCCAC
CAGGCCTGAGCCCACACAACATGCAACAACCAGGGACAAGTCAACCATACATGAACCAGCCAAGCATGAA
CCAACCAGCCATGAACGAACCAGGTGTAACAATACCAGACTCAAGCCAATCAGATATAAATCAAGCAGGC
CAGAGCCAACCCAATATGAAACAACCGTGGTCAAGCACGAACCAACCAGGCATCTACAAAACAGACATGA
GCCAACTGGGTATGAAACAACCAAGTGCAAGTCAAGCAGGCATGAGCCAAGCAGGCATGTGGCAGCCAGG
CCCACCCACTTCCGATATGAAAACAATAAACCCATGGCAATGGGACCCAGAGTATTCAGGCAGGGAACCA
TCAGACACGTGGCAAATAACCCAAAGTAATCAGGGAACAGGGCAATCAGATACAGTGCAAGAAGACCCAA
GCTGTGCAGAACAGAAACAACCAGATACATGGAAACAGGACCCAAGTTTTCCAGGAATGAAAAAAACAGA
ACCATGGCAATGGGAATCAAGCCCTCCAAGTGTGAGACAAATAGATGCATGGAAGTGGGACCCAGACCAC
CCAGGCAGCAACCAATTAAATTTATGGCAACCACAACTAAGTGACTCATCTACCAGACAATTCGACTTGA
GACAAGCAGGTCCCATTGAACTTGGTAAGAAGGAATCTGATACCTGGCAACTAGTCCCTAGTCAACAAGG
CAAGACACCATCAAGCTCAGGGCAACAGGACCCTAGCCAACAAATTGTGAGACATGCAGTCACATGGCAA
ACAGGTCCTAGCCCACTAGCAAAAACATTGTCAGGTCCATGGCATATAGGCCTCAACCAATCAGGTATGG
AACAGTTGAACACATGTCAAACAGGCTTCGGCCAAAGGTACAGCATGTGTCAATCAAGCGGCAGCCAATC
AAGCATGAAAGAGTTTCACATGCTGCAATCAGGTAGCAATCAACCAGATATGAACGATGTGGATGTATGG
CAATCAGGCACCAGCCAACCAGGCATGCATCAGATGGATCCATGGCAATGGGGTCACAACTACTCAGGCA
ATACACAATCAGGCCAATGGACACCAGGCCCCAACGCTCTGGTTGTGGGACAATTTGATTCATGGCAACC
AGTCCAACCTGGCATGAAATATTCAGAATCAGGGCCATGGAGTCCAAGGCACTTAGATATGAGACAACCA
AGCCCCAGCCAATTAGCCACAAGACAATTTGATAAATGGCAACAAAATCCCAGCATGCCTGGTGTTAGAC
AATTATACACATGGCAGCCAACCTCAAGTTTCTCTGACACAAGACAATTAGAAAAATTTCATCCCTGCCC
TATCAATCTAAACATGGAACAATTTTGGGAAGCAGTGTCAAGGCAACCAGGAACCACTCAGTTAGGCACA
AACCAATTAGATACAAACCAACCTGATGGCACCCAATCAAGCCAAGGAGGAAAGACACAATCAGATAAAT
TGGAGCCAAGTCCAAGAAAACCAGAGATGAAAGGTAGTCAACCAGACACTAGCCAATCAGACTCAGATCA
TCTAGACATAAGCCAACCAGGTCCAAGTCAATTAGAGCCAGGTGAATCAAGCATGAGTGATTTAAATGAA
AGTCAACAAAGAATTACACAATCTCCCATGGGAAAAAAAGATTCTTGTTCTTTCTTCATAAGACCTGCTG
AGCCTGAAGATTGCCCAGATATCCTGAGATTGATTAAAGAACTGGCTTCTTATGAAGGCATGGAAGAAAA
AGTGTCATTAACAGAACGGGATTTATTCAGGGATGGTTTTGGGGACAATCCACTTTTCTACTGCCTGGTT
GCTGAAGCACCCAGTGAACAGACAGAATCAGGAGTCAAAACCATTGGATTTGCCATGTACTACTTCACAT
ATGACCCACGGATTGGCAAACTGCTTCACCTAGAGGATTTTTATATCACTGAAGACTATCAAGGTATAGG
TATTGGGGCTGACATGCTGAAGAAGCTAAGTCAGATAGCCATCAACACCGAATGCTGTGGCATGCAGTTT
CTTGTCATCATTTGGAATCAGGATTCTGTTGAGTACTATACTCGCCTAGGGGCTTTAGACCTCTCCTGTG
AGGAAGGCTGGCATCTGTTCAGATTTAACTTGGATGATCTCCTGGAGCTTGCAGAGGAAGAATGA

Translation (744 aa):
MDQPGTYQSGMTQPSVSQPAMSPPGLSPHNMQQPGTSQPYMNQPSMNQPAMNEPGVTIPDSSQSDINQAG
QSQPNMKQPWSSTNQPGIYKTDMSQLGMKQPSASQAGMSQAGMWQPGPPTSDMKTINPWQWDPEYSGREP
SDTWQITQSNQGTGQSDTVQEDPSCAEQKQPDTWKQDPSFPGMKKTEPWQWESSPPSVRQIDAWKWDPDH
PGSNQLNLWQPQLSDSSTRQFDLRQAGPIELGKKESDTWQLVPSQQGKTPSSSGQQDPSQQIVRHAVTWQ
TGPSPLAKTLSGPWHIGLNQSGMEQLNTCQTGFGQRYSMCQSSGSQSSMKEFHMLQSGSNQPDMNDVDVW
QSGTSQPGMHQMDPWQWGHNYSGNTQSGQWTPGPNALVVGQFDSWQPVQPGMKYSESGPWSPRHLDMRQP
SPSQLATRQFDKWQQNPSMPGVRQLYTWQPTSSFSDTRQLEKFHPCPINLNMEQFWEAVSRQPGTTQLGT
NQLDTNQPDGTQSSQGGKTQSDKLEPSPRKPEMKGSQPDTSQSDSDHLDISQPGPSQLEPGESSMSDLNE
SQQRITQSPMGKKDSCSFFIRPAEPEDCPDILRLIKELASYEGMEEKVSLTERDLFRDGFGDNPLFYCLV
AEAPSEQTESGVKTIGFAMYYFTYDPRIGKLLHLEDFYITEDYQGIGIGADMLKKLSQIAINTECCGMQF
LVIIWNQDSVEYYTRLGALDLSCEEGWHLFRFNLDDLLELAEEE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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